MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.9 nTPM
HPA Brain:78.6 nTPM
GTEx:17.9 nTPM
FANTOM5:359.2 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:7.3 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.7
1830 Male, age 51, unknown 82.1
2219 Male, age 76, both hemispheres 75.7
1833 Male, age 53, unknown 71.2
2411 Female, age 72, unknown 66.0
2019 Male, age 18, unknown 62.7
1870 Female, age 42, unknown 59.2
2828 Female, age 72, unknown 46.1
2666 Male, age 74, left hemisphere 44.0
1827 Male, age 72, unknown 38.3
2586 Male, age 75, left hemisphere 31.2
Dorsal raphe nucleus
nTPM: 40.6
2750 Male, age 76, both hemispheres 83.8
2016 Female, age 72, unknown 41.3
1828 Male, age 53, unknown 38.6
2047 Male, age 72, unknown 22.7
2298 Female, age 72, unknown 16.4
Inferior colliculus
nTPM: 35.6
1890 Male, age 53, unknown 43.4
2849 Male, age 72, unknown 36.9
1848 Female, age 42, unknown 35.8
2097 Female, age 72, unknown 26.3
Median raphe nucleus
nTPM: 41.0
2220 Male, age 76, midline 41.0
Periaquaductal grey, anterior
nTPM: 33.1
2502 Female, age 75, unknown 44.9
1947 Male, age 18, unknown 31.3
1795 Male, age 51, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 25.5
2464 Female, age 72, unknown 41.4
1831 Male, age 72, unknown 27.9
2850 Male, age 76, both hemispheres 18.5
1840 Male, age 53, unknown 14.3
Periaquaductal grey, lateral
nTPM: 25.6
2053 Male, age 18, unknown 31.6
2272 Male, age 74, both hemispheres 29.4
2140 Male, age 76, both hemispheres 15.8
Pretectal area
nTPM: 32.8
2316 Male, age 76, right hemisphere 56.8
1815 Male, age 53, unknown 46.2
2407 Male, age 75, both hemispheres 38.3
2825 Male, age 18, unknown 37.8
2007 Male, age 72, unknown 35.4
1817 Female, age 42, unknown 32.1
2224 Female, age 72, unknown 27.8
2273 Male, age 74, both hemispheres 26.8
1944 Female, age 72, unknown 20.6
2667 Female, age 75, unknown 19.9
1816 Male, age 51, unknown 19.6
Red nucleus
nTPM: 78.6
2823 Male, age 76, right hemisphere 110.9
1865 Male, age 51, unknown 99.5
1904 Male, age 53, unknown 86.3
2503 Female, age 72, unknown 85.0
1821 Female, age 72, unknown 79.7
2785 Male, age 18, unknown 77.8
2227 Male, age 72, unknown 77.0
2769 Male, age 72, unknown 76.6
1954 Female, age 42, unknown 69.5
2588 Male, age 74, left hemisphere 66.6
2725 Female, age 75, unknown 61.8
2584 Male, age 75, left hemisphere 52.4
Substantia nigra
nTPM: 43.3
2409 Female, age 72, unknown 61.8
2590 Female, age 75, unknown 50.8
2583 Male, age 75, right hemisphere 49.6
1851 Male, age 51, unknown 46.0
1889 Female, age 72, unknown 44.0
2241 Male, age 72, unknown 43.8
2699 Male, age 18, unknown 43.1
1941 Male, age 53, unknown 36.4
1916 Female, age 42, unknown 29.9
2665 Male, age 74, both hemispheres 28.1
Superior colliculus
nTPM: 45.6
1913 Female, age 42, unknown 77.6
1995 Male, age 72, unknown 63.7
1895 Male, age 76, right hemisphere 59.9
1839 Male, age 51, unknown 50.3
2587 Male, age 74, left hemisphere 50.1
2668 Female, age 75, unknown 48.6
1796 Male, age 53, unknown 29.5
2664 Male, age 75, both hemispheres 26.3
2087 Female, age 72, unknown 26.0
2261 Male, age 18, unknown 23.6
Ventral tegmental area
nTPM: 47.0
2223 Female, age 72, unknown 66.6
2410 Female, age 72, unknown 61.0
2021 Male, age 53, unknown 41.7
2218 Male, age 76, both hemispheres 40.2
1942 Male, age 51, unknown 39.3
1915 Female, age 42, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 139

Max nTPM: 65.2
Min nTPM: 2.2
Std nTPM: 10.9
Median nTPM: 15.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 60.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 47.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 46.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 45.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 44.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 42.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 41.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 37.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 36.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 36.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 359.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 359.2
FF:10158-103A5 76 years, female 359.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 46.6
Min nTPM: 16.7
Sample A Female 20.1
Sample B Female 16.7
Sample C Male 21.3
Sample D Male 46.6
Midbrain
nTPM: 24.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 14.3
Sample A Female 41.6
Sample B Female 25.2
Sample C Male 14.3
Sample D Male 17.7
Periaqueductal gray
nTPM: 20.1
Samples: 3

Max nTPM: 22.7
Min nTPM: 16.0
Sample B Female 22.7
Sample C Male 16.0
Sample D Male 21.5
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 24.5
Min nTPM: 10.7
Sample A Female 17.1
Sample B Female 10.7
Sample C Male 19.8
Sample D Male 24.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.7
Sample A Male 6.8
Sample B Male 6.7
Sample C Female 7.7
Sample D Female 7.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69290531 Antisense, RP_050407_04_C01, Mouse strain C57BL/6J (56 days, male) 0.9
75038443 Antisense, RP_060412_04_A04, Mouse strain C57BL/6J (56 days, male) 0.1

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