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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:203.3 nTPM
HPA Brain:158.0 nTPM
GTEx:203.3 nTPM
FANTOM5:395.9 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:0.1 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

158.0
Sample id Sample description nTPM
Amygdala
nTPM: 158.0
2695 Female, age 67, right hemisphere 214.0
2814 Male, age 76, right hemisphere 197.2
1987 Female, age 91, left hemisphere 159.0
2514 Male, age 75, right hemisphere 128.0
2517 Female, age 94, left hemisphere 91.8
Basal amygdala
nTPM: 103.1
1955 Male, age 76, both hemispheres 183.1
2110 Male, age 80, left hemisphere 107.5
2609 Male, age 75, right hemisphere 97.4
2827 Female, age 67, right hemisphere 85.1
2243 Female, age 91, right hemisphere 74.7
2685 Female, age 94, left hemisphere 70.9
Central amygdala
nTPM: 139.4
2515 Male, age 75, right hemisphere 184.6
1905 Male, age 76, both hemispheres 182.3
2239 Male, age 80, left hemisphere 111.6
2826 Female, age 94, left hemisphere 110.0
2701 Female, age 91, right hemisphere 108.3
Corticomedial amygdala
nTPM: 109.3
2240 Male, age 76, both hemispheres 168.3
2428 Male, age 75, right hemisphere 119.3
2242 Female, age 91, right hemisphere 105.2
2829 Male, age 80, left hemisphere 99.4
2429 Female, age 94, left hemisphere 95.8
2535 Female, age 67, right hemisphere 67.5
Lateral amygdala
nTPM: 119.2
1883 Male, age 76, both hemispheres 197.3
2256 Male, age 80, left hemisphere 142.3
2830 Female, age 67, right hemisphere 107.7
2516 Male, age 75, right hemisphere 107.3
2534 Female, age 94, left hemisphere 84.9
2255 Female, age 91, right hemisphere 75.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 203.3
Samples: 152

Max nTPM: 663.6
Min nTPM: 20.1
Std nTPM: 87.7
Median nTPM: 193.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 663.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 526.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 523.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 397.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 370.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 368.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 354.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 348.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 338.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 330.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 326.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 321.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 321.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 315.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 309.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 306.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 304.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 294.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 294.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 286.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 285.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 284.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 283.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 282.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 274.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 270.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 269.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 267.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 266.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 265.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 262.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 262.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 259.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 257.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 257.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 244.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 242.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 241.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 240.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 239.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 231.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 231.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 230.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 229.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 225.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 224.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 220.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 220.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 218.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 217.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 217.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 217.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 215.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 213.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 212.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 211.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 210.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 210.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 209.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 207.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 207.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 207.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 206.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 206.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 201.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 200.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 200.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 200.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 200.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 198.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 198.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 196.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 196.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 195.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 195.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 194.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 191.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 190.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 189.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 189.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 186.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 186.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 183.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 183.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 180.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 178.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 178.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 176.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 176.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 175.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 174.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 169.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 168.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 167.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 165.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 164.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 164.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 163.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 163.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 162.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 162.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 162.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 161.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 161.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 157.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 156.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 156.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 156.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 154.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 153.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 153.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 151.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 150.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 150.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 148.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 147.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 145.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 143.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 141.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 140.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 139.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 139.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 138.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 136.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 135.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 134.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 133.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 131.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 130.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 127.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 126.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 125.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 125.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 120.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 120.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 120.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 117.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 112.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 108.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 106.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 104.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 102.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 101.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 101.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 95.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 90.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 83.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 78.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 72.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 57.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 38.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 20.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

395.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 395.9
FF:10151-102I7 76 years, female 395.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.1
Pig sample Sample description nTPM
Amygdala
nTPM: 1.2
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.5
Sample A Female 1.7
Sample B Female 0.5
Sample C Male 0.7
Sample D Male 1.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
70785780 Antisense, RP_050706_02_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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