We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NDUFB9
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • NDUFB9
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:480.4 nTPM
HPA Brain:127.7 nTPM
GTEx:480.4 nTPM
FANTOM5:359.3 Scaled Tags Per Million
Pig:106.9 nTPM
Mouse:626.9 nTPM
Allen mouse:10.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.7
Sample id Sample description nTPM
Amygdala
nTPM: 127.7
2814 Male, age 76, right hemisphere 180.5
2514 Male, age 75, right hemisphere 132.8
2695 Female, age 67, right hemisphere 121.4
2517 Female, age 94, left hemisphere 115.1
1987 Female, age 91, left hemisphere 88.7
Basal amygdala
nTPM: 105.4
2609 Male, age 75, right hemisphere 134.8
1955 Male, age 76, both hemispheres 125.3
2243 Female, age 91, right hemisphere 100.1
2110 Male, age 80, left hemisphere 99.4
2685 Female, age 94, left hemisphere 98.2
2827 Female, age 67, right hemisphere 74.8
Central amygdala
nTPM: 110.8
1905 Male, age 76, both hemispheres 165.0
2826 Female, age 94, left hemisphere 118.5
2239 Male, age 80, left hemisphere 105.1
2515 Male, age 75, right hemisphere 86.3
2701 Female, age 91, right hemisphere 79.2
Corticomedial amygdala
nTPM: 105.0
2429 Female, age 94, left hemisphere 135.5
2240 Male, age 76, both hemispheres 125.0
2829 Male, age 80, left hemisphere 109.6
2428 Male, age 75, right hemisphere 101.0
2242 Female, age 91, right hemisphere 88.1
2535 Female, age 67, right hemisphere 70.9
Lateral amygdala
nTPM: 106.3
2516 Male, age 75, right hemisphere 158.1
1883 Male, age 76, both hemispheres 152.6
2534 Female, age 94, left hemisphere 114.4
2830 Female, age 67, right hemisphere 85.3
2255 Female, age 91, right hemisphere 63.9
2256 Male, age 80, left hemisphere 63.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

480.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 480.4
Samples: 152

Max nTPM: 2040.9
Min nTPM: 93.2
Std nTPM: 221.9
Median nTPM: 449.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2040.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1361.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1147.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1131.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1019.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 987.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 898.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 847.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 788.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 734.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 717.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 710.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 705.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 691.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 686.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 673.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 671.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 660.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 654.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 640.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 638.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 618.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 617.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 605.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 596.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 591.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 587.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 587.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 585.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 583.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 580.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 570.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 569.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 568.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 556.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 552.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 545.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 542.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 537.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 535.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 533.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 533.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 530.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 529.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 527.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 521.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 517.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 515.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 509.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 502.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 500.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 499.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 496.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 495.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 495.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 494.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 494.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 492.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 491.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 491.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 489.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 489.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 486.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 482.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 481.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 468.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 468.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 468.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 461.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 460.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 458.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 457.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 457.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 453.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 452.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 451.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 447.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 446.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 439.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 437.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 435.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 423.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 411.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 411.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 409.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 408.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 398.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 398.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 395.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 395.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 395.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 391.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 387.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 386.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 384.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 384.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 384.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 384.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 382.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 381.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 380.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 378.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 375.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 374.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 372.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 371.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 371.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 366.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 365.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 365.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 362.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 351.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 349.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 348.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 347.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 346.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 344.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 343.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 339.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 339.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 337.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 337.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 335.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 335.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 331.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 331.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 330.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 325.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 321.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 317.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 310.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 310.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 305.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 305.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 301.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 298.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 297.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 292.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 288.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 283.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 277.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 275.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 275.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 259.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 254.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 253.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 245.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 238.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 232.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 228.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 186.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 93.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

359.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 359.3
FF:10151-102I7 76 years, female 359.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.9
Pig sample Sample description nTPM
Amygdala
nTPM: 106.9
Samples: 4

Max nTPM: 148.2
Min nTPM: 86.9
Sample A Female 148.2
Sample B Female 96.9
Sample C Male 95.6
Sample D Male 86.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

626.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 626.9
Samples: 4

Max nTPM: 700.8
Min nTPM: 565.3
Sample A Male 565.3
Sample B Male 638.7
Sample C Female 700.8
Sample D Female 602.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.0
68631911 Antisense, RP_050125_01_C12, Mouse strain C57BL/6J (56 days, male) 10.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org