MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:465.3 nTPM
HPA Brain:165.9 nTPM
GTEx:465.3 nTPM
FANTOM5:288.6 Scaled Tags Per Million
Pig:212.6 nTPM
Mouse:470.0 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 165.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 123.2
2019 Male, age 18, unknown 160.0
1870 Female, age 42, unknown 152.9
2219 Male, age 76, both hemispheres 128.3
1827 Male, age 72, unknown 122.9
2411 Female, age 72, unknown 122.1
2666 Male, age 74, left hemisphere 117.2
2586 Male, age 75, left hemisphere 109.7
2828 Female, age 72, unknown 109.3
1833 Male, age 53, unknown 108.8
1830 Male, age 51, unknown 100.5
Dorsal raphe nucleus
nTPM: 114.4
1828 Male, age 53, unknown 135.6
2750 Male, age 76, both hemispheres 124.8
2298 Female, age 72, unknown 111.3
2047 Male, age 72, unknown 103.1
2016 Female, age 72, unknown 97.3
Inferior colliculus
nTPM: 143.7
1890 Male, age 53, unknown 167.0
2097 Female, age 72, unknown 164.1
1848 Female, age 42, unknown 130.2
2849 Male, age 72, unknown 113.4
Median raphe nucleus
nTPM: 116.7
2220 Male, age 76, midline 116.7
Periaquaductal grey, anterior
nTPM: 112.2
2502 Female, age 75, unknown 118.3
1947 Male, age 18, unknown 109.6
1795 Male, age 51, unknown 108.7
Periaquaductal grey, dorsal
nTPM: 94.7
2850 Male, age 76, both hemispheres 106.7
1831 Male, age 72, unknown 94.4
1840 Male, age 53, unknown 92.7
2464 Female, age 72, unknown 85.1
Periaquaductal grey, lateral
nTPM: 87.3
2053 Male, age 18, unknown 95.4
2140 Male, age 76, both hemispheres 86.5
2272 Male, age 74, both hemispheres 80.0
Pretectal area
nTPM: 122.0
2007 Male, age 72, unknown 174.4
1817 Female, age 42, unknown 165.3
1944 Female, age 72, unknown 160.2
1816 Male, age 51, unknown 148.6
1815 Male, age 53, unknown 128.8
2667 Female, age 75, unknown 121.3
2224 Female, age 72, unknown 104.1
2316 Male, age 76, right hemisphere 102.1
2825 Male, age 18, unknown 99.5
2273 Male, age 74, both hemispheres 71.1
2407 Male, age 75, both hemispheres 66.6
Red nucleus
nTPM: 165.9
2503 Female, age 72, unknown 203.4
2725 Female, age 75, unknown 197.8
1821 Female, age 72, unknown 193.1
2588 Male, age 74, left hemisphere 192.8
1865 Male, age 51, unknown 171.7
2769 Male, age 72, unknown 163.9
1954 Female, age 42, unknown 157.1
2823 Male, age 76, right hemisphere 154.9
2785 Male, age 18, unknown 154.8
2227 Male, age 72, unknown 153.1
1904 Male, age 53, unknown 147.3
2584 Male, age 75, left hemisphere 100.6
Substantia nigra
nTPM: 148.9
1916 Female, age 42, unknown 204.8
1889 Female, age 72, unknown 181.1
1851 Male, age 51, unknown 162.6
2409 Female, age 72, unknown 162.3
2665 Male, age 74, both hemispheres 153.8
1941 Male, age 53, unknown 147.8
2241 Male, age 72, unknown 146.3
2699 Male, age 18, unknown 137.6
2583 Male, age 75, right hemisphere 100.3
2590 Female, age 75, unknown 92.1
Superior colliculus
nTPM: 110.5
1895 Male, age 76, right hemisphere 144.4
2668 Female, age 75, unknown 126.9
2087 Female, age 72, unknown 121.9
1796 Male, age 53, unknown 121.7
2587 Male, age 74, left hemisphere 120.6
1913 Female, age 42, unknown 116.2
1995 Male, age 72, unknown 103.1
1839 Male, age 51, unknown 101.1
2261 Male, age 18, unknown 99.3
2664 Male, age 75, both hemispheres 50.2
Ventral tegmental area
nTPM: 135.7
2223 Female, age 72, unknown 168.2
1915 Female, age 42, unknown 149.4
2218 Male, age 76, both hemispheres 148.2
2410 Female, age 72, unknown 136.7
1942 Male, age 51, unknown 117.7
2021 Male, age 53, unknown 93.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 465.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 465.3
Samples: 139

Max nTPM: 1324.8
Min nTPM: 221.6
Std nTPM: 156.8
Median nTPM: 437.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1324.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1011.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 883.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 848.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 836.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 786.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 764.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 728.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 692.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 676.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 654.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 288.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 288.6
FF:10158-103A5 76 years, female 288.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 212.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 154.8
Samples: 4

Max nTPM: 210.2
Min nTPM: 121.6
Sample A Female 210.2
Sample B Female 121.6
Sample C Male 162.6
Sample D Male 124.7
Midbrain
nTPM: 189.0
Samples: 4

Max nTPM: 239.9
Min nTPM: 159.9
Sample A Female 184.9
Sample B Female 159.9
Sample C Male 239.9
Sample D Male 171.2
Periaqueductal gray
nTPM: 128.7
Samples: 3

Max nTPM: 147.0
Min nTPM: 112.9
Sample B Female 126.1
Sample C Male 147.0
Sample D Male 112.9
Superior colliculi
nTPM: 212.6
Samples: 4

Max nTPM: 267.9
Min nTPM: 166.1
Sample A Female 233.8
Sample B Female 166.1
Sample C Male 267.9
Sample D Male 182.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 470.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 470.0
Samples: 4

Max nTPM: 517.7
Min nTPM: 439.0
Sample A Male 517.7
Sample B Male 442.1
Sample C Female 439.0
Sample D Female 481.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
68631911 Antisense, RP_050125_01_C12, Mouse strain C57BL/6J (56 days, male) 6.1

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