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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LACTATING BREAST LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:159.8 nTPM
HPA:159.8 nTPM
GTEx:71.7 nTPM
FANTOM5:423.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA016607Antibody CAB037331
Glandular cells MediumHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.8
overview
Male, age 65
Small intestine sample 232
nTPM: 238.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 111.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 177.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 112

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 71.7
Samples: 187

Max nTPM: 336.0
Min nTPM: 11.2
Std nTPM: 54.5
Median nTPM: 58.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 336.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 280.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 253.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 248.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 217.4
GTEX-1192X-2526-SM-59868 50-59 years, male 213.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 209.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 207.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 203.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 191.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 182.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 166.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 164.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 161.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 158.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 149.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 148.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 143.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 142.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 141.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 137.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 136.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 133.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 132.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 127.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 125.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 124.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 123.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 122.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 116.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 114.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 113.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 111.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 110.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 110.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 109.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 106.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 103.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 100.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 100.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 97.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 96.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 93.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 90.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 90.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 88.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 87.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 87.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 86.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 85.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 84.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 84.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 81.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 81.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 81.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 81.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 81.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 78.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 78.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 77.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 76.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 75.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 75.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 72.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 72.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 72.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 70.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 70.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 69.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 69.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 69.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 68.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 68.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 67.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 67.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 67.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 67.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 66.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 64.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 64.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 64.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 63.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 63.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 62.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 62.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 60.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 60.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 60.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 60.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 59.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 59.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 58.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 58.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 58.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 58.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 57.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 57.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 55.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 55.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 55.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 54.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 53.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 50.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 50.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 49.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 48.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 48.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 47.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 45.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 44.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 44.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 43.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 43.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 42.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 42.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 42.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 42.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 41.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 41.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 41.5
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 41.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 40.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 40.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 40.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 40.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 39.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 39.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 39.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 38.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 38.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 38.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 37.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 36.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 35.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 35.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 35.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 34.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 33.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 33.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 32.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 32.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 32.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 31.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 31.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 31.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 30.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 30.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 30.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 29.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 29.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 29.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 29.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 28.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 28.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 28.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 27.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 27.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 27.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 27.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 26.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 26.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 26.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 24.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 24.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 24.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 23.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 23.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 23.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 23.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 22.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 22.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 21.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 21.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 20.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 20.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 20.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 19.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 19.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 19.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 19.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 19.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 18.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 18.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 18.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 15.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 15.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 11.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

423.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 423.5
FF:10024-101D6 15,40,85 years, mixed 423.5

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