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STOM
HPA
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PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

STOM
Synonyms BND7, EPB7, EPB72
Gene descriptioni

Full gene name according to HGNC.

Stomatin
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 9
Cytoband q33.2
Chromosome location (bp) 121338987 - 121370304
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000148175 (version 109)
Entrez gene 2040
HGNC HGNC:3383
UniProt P27105 (UniProt - Evidence at protein level)
neXtProt NX_P27105
GeneCards STOM
Antibodypedia STOM antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Regulates ion channel activity and transmembrane ion transport. Regulates ASIC2 and ASIC3 channel activity.... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of a highly conserved family of integral membrane proteins. The encoded protein localizes to the cell membrane of red blood cells and other cell types, where it may regulate ion channels and transporters. Loss of localization of the encoded protein is associated with hereditary stomatocytosis, a form of hemolytic anemia. There is a pseudogene for this gene on chromosome 6. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2012]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
STOM-201
ENSP00000286713
ENST00000286713
P27105
[Direct mapping] Stomatin
Show all
A0A024R882
[Target identity:100%; Query identity:100%] Stomatin, isoform CRA_a
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005615 [extracellular space]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005783 [endoplasmic reticulum]
GO:0005856 [cytoskeleton]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0016020 [membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031982 [vesicle]
GO:0034765 [regulation of ion transmembrane transport]
GO:0035577 [azurophil granule membrane]
GO:0035579 [specific granule membrane]
GO:0042470 [melanosome]
GO:0042802 [identical protein binding]
GO:0042803 [protein homodimerization activity]
GO:0044829 [positive regulation by host of viral genome replication]
GO:0045121 [membrane raft]
GO:0048471 [perinuclear region of cytoplasm]
GO:0048524 [positive regulation of viral process]
GO:0070062 [extracellular exosome]
GO:0070063 [RNA polymerase binding]
GO:0070821 [tertiary granule membrane]
GO:0072562 [blood microparticle]
GO:0090314 [positive regulation of protein targeting to membrane]
GO:1901585 [regulation of acid-sensing ion channel activity]
Show all
288 aa
31.7 kDa
No 1
STOM-202
ENSP00000339607
ENST00000347359
P27105
[Direct mapping] Stomatin
Show all
Transporters
   Accessory Factors Involved in Transport
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005615 [extracellular space]
GO:0005737 [cytoplasm]
GO:0005739 [mitochondrion]
GO:0005783 [endoplasmic reticulum]
GO:0005856 [cytoskeleton]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0016020 [membrane]
GO:0031410 [cytoplasmic vesicle]
GO:0031982 [vesicle]
GO:0035577 [azurophil granule membrane]
GO:0035579 [specific granule membrane]
GO:0042470 [melanosome]
GO:0042802 [identical protein binding]
GO:0045121 [membrane raft]
GO:0070062 [extracellular exosome]
GO:0070063 [RNA polymerase binding]
GO:0070821 [tertiary granule membrane]
GO:0072562 [blood microparticle]
Show all
123 aa
13.5 kDa
No 1
STOM-203
ENSP00000445764
ENST00000538954
F8VSL7
[Direct mapping] Stomatin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0016020 [membrane]
Show all
168 aa
18.7 kDa
No 1

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