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CRB2
HPA
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  • CRB2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CRB2
Synonyms FLJ16786, FLJ38464
Gene descriptioni

Full gene name according to HGNC.

Crumbs cell polarity complex component 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Human disease related genes
Potential drug targets
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 9
Cytoband q33.3
Chromosome location (bp) 123356170 - 123380324
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000148204 (version 109)
Entrez gene 286204
HGNC HGNC:18688
UniProt Q5IJ48 (UniProt - Evidence at protein level)
neXtProt NX_Q5IJ48
GeneCards CRB2
Antibodypedia CRB2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Apical polarity protein that plays a central role during the epithelial-to-mesenchymal transition (EMT) at gastrulation, when newly specified mesodermal cells move inside the embryo (By similarity). Acts by promoting cell ingression, the process by which cells leave the epithelial epiblast and move inside the embryo to form a new tissue layer (By similarity). The anisotropic distribution of CRB2 and MYH10/myosin-IIB at cell edges define which cells will ingress: cells with high apical CRB2 are probably extruded from the epiblast by neighboring cells with high levels of apical MYH10/myosin-IIB (By similarity). Plays a role in the maintenance of retinal neuroepithelium organization, structural integrity, adhesion, photoreceptor polarity and retinal photoreceptor layer thickness (By similarity). May play a role in determining the length of cone photoreceptor outer segments and proliferation of late-born progenitor cells (By similarity). Also required for maintenance of the apical polarity complex during development of the cortex (By similarity). Inhibits gamma-secretase-dependent cleavage of APP and secretion of amyloid-beta peptide 40 and amyloid-beta peptide 42, and thereby inhibits gamma-secretase-dependent Notch transcription 1.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Gastrulation, Sensory transduction, Vision
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Calcium
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of a family of proteins that are components of the Crumbs cell polarity complex. In mammals, members of this family are thought to play a role in many cellular processes in early embryonic development. A similar protein in Drosophila determines apicobasal polarity in embryonic epithelial cells. Mutations in this gene are associated with focal segmental glomerulosclerosis 9, and with ventriculomegaly with cystic kidney disease. [provided by RefSeq, Aug 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CRB2-201
ENSP00000353092
ENST00000359999
Q5IJ48
[Direct mapping] Protein crumbs homolog 2
Show all
Transporters
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001707 [mesoderm formation]
GO:0001756 [somitogenesis]
GO:0001895 [retina homeostasis]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0007157 [heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules]
GO:0007369 [gastrulation]
GO:0007601 [visual perception]
GO:0010470 [regulation of gastrulation]
GO:0010718 [positive regulation of epithelial to mesenchymal transition]
GO:0010951 [negative regulation of endopeptidase activity]
GO:0014028 [notochord formation]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0019828 [aspartic-type endopeptidase inhibitor activity]
GO:0030010 [establishment of cell polarity]
GO:0030513 [positive regulation of BMP signaling pathway]
GO:0032991 [protein-containing complex]
GO:0043296 [apical junction complex]
GO:0044877 [protein-containing complex binding]
GO:0045197 [establishment or maintenance of epithelial cell apical/basal polarity]
GO:0045199 [maintenance of epithelial cell apical/basal polarity]
GO:0045494 [photoreceptor cell maintenance]
GO:0046549 [retinal cone cell development]
GO:0050896 [response to stimulus]
GO:0055111 [ingression involved in gastrulation with mouth forming second]
GO:0070062 [extracellular exosome]
GO:0070161 [anchoring junction]
GO:0072359 [circulatory system development]
Show all
1176 aa
123.2 kDa
Yes 0
CRB2-202
ENSP00000362734
ENST00000373631
Q5IJ48
[Direct mapping] Protein crumbs homolog 2
Show all
Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Potential drug targets
Human disease related genes
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001707 [mesoderm formation]
GO:0001756 [somitogenesis]
GO:0001895 [retina homeostasis]
GO:0005509 [calcium ion binding]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005737 [cytoplasm]
GO:0005886 [plasma membrane]
GO:0007157 [heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules]
GO:0007369 [gastrulation]
GO:0007601 [visual perception]
GO:0010470 [regulation of gastrulation]
GO:0010718 [positive regulation of epithelial to mesenchymal transition]
GO:0010951 [negative regulation of endopeptidase activity]
GO:0014028 [notochord formation]
GO:0016020 [membrane]
GO:0016324 [apical plasma membrane]
GO:0016327 [apicolateral plasma membrane]
GO:0019828 [aspartic-type endopeptidase inhibitor activity]
GO:0030010 [establishment of cell polarity]
GO:0030054 [cell junction]
GO:0030513 [positive regulation of BMP signaling pathway]
GO:0032991 [protein-containing complex]
GO:0035003 [subapical complex]
GO:0043296 [apical junction complex]
GO:0044877 [protein-containing complex binding]
GO:0045177 [apical part of cell]
GO:0045197 [establishment or maintenance of epithelial cell apical/basal polarity]
GO:0045199 [maintenance of epithelial cell apical/basal polarity]
GO:0045494 [photoreceptor cell maintenance]
GO:0046549 [retinal cone cell development]
GO:0050896 [response to stimulus]
GO:0055111 [ingression involved in gastrulation with mouth forming second]
GO:0070062 [extracellular exosome]
GO:0070161 [anchoring junction]
GO:0072359 [circulatory system development]
Show all
1285 aa
134.3 kDa
Yes 1

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