MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.7 nTPM
HPA Brain:126.3 nTPM
GTEx:18.7 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:16.5 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 126.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.8
2019 Male, age 18, unknown 116.5
2828 Female, age 72, unknown 102.5
1827 Male, age 72, unknown 99.9
1830 Male, age 51, unknown 99.1
1833 Male, age 53, unknown 98.5
2219 Male, age 76, both hemispheres 98.0
2411 Female, age 72, unknown 95.6
2586 Male, age 75, left hemisphere 94.6
2666 Male, age 74, left hemisphere 85.4
1870 Female, age 42, unknown 78.2
Dorsal raphe nucleus
nTPM: 107.3
2016 Female, age 72, unknown 121.4
2047 Male, age 72, unknown 114.8
2298 Female, age 72, unknown 112.5
1828 Male, age 53, unknown 94.7
2750 Male, age 76, both hemispheres 93.1
Inferior colliculus
nTPM: 102.7
1890 Male, age 53, unknown 104.7
2849 Male, age 72, unknown 103.3
2097 Female, age 72, unknown 102.8
1848 Female, age 42, unknown 100.2
Median raphe nucleus
nTPM: 85.9
2220 Male, age 76, midline 85.9
Periaquaductal grey, anterior
nTPM: 102.3
1947 Male, age 18, unknown 110.5
2502 Female, age 75, unknown 98.9
1795 Male, age 51, unknown 97.4
Periaquaductal grey, dorsal
nTPM: 113.2
2850 Male, age 76, both hemispheres 122.8
1831 Male, age 72, unknown 111.1
1840 Male, age 53, unknown 110.6
2464 Female, age 72, unknown 108.2
Periaquaductal grey, lateral
nTPM: 126.3
2272 Male, age 74, both hemispheres 138.4
2140 Male, age 76, both hemispheres 137.4
2053 Male, age 18, unknown 103.2
Pretectal area
nTPM: 109.5
2273 Male, age 74, both hemispheres 141.3
2007 Male, age 72, unknown 128.1
1944 Female, age 72, unknown 121.6
1816 Male, age 51, unknown 117.5
2316 Male, age 76, right hemisphere 110.2
2667 Female, age 75, unknown 105.8
1817 Female, age 42, unknown 104.6
1815 Male, age 53, unknown 101.2
2224 Female, age 72, unknown 99.0
2825 Male, age 18, unknown 89.4
2407 Male, age 75, both hemispheres 85.8
Red nucleus
nTPM: 107.6
1954 Female, age 42, unknown 115.5
2785 Male, age 18, unknown 113.8
1865 Male, age 51, unknown 112.8
2725 Female, age 75, unknown 112.4
2503 Female, age 72, unknown 112.0
2823 Male, age 76, right hemisphere 112.0
1904 Male, age 53, unknown 111.5
2769 Male, age 72, unknown 108.4
2227 Male, age 72, unknown 105.0
2588 Male, age 74, left hemisphere 104.1
1821 Female, age 72, unknown 99.3
2584 Male, age 75, left hemisphere 84.9
Substantia nigra
nTPM: 92.3
1941 Male, age 53, unknown 112.1
1889 Female, age 72, unknown 105.6
2590 Female, age 75, unknown 105.0
2409 Female, age 72, unknown 102.7
1916 Female, age 42, unknown 94.5
2583 Male, age 75, right hemisphere 93.8
2699 Male, age 18, unknown 80.7
1851 Male, age 51, unknown 80.4
2665 Male, age 74, both hemispheres 80.1
2241 Male, age 72, unknown 67.8
Superior colliculus
nTPM: 95.3
2261 Male, age 18, unknown 113.5
2087 Female, age 72, unknown 111.0
1895 Male, age 76, right hemisphere 108.2
1995 Male, age 72, unknown 98.9
1839 Male, age 51, unknown 92.4
1913 Female, age 42, unknown 89.2
2587 Male, age 74, left hemisphere 89.1
1796 Male, age 53, unknown 87.5
2668 Female, age 75, unknown 83.0
2664 Male, age 75, both hemispheres 80.6
Ventral tegmental area
nTPM: 91.4
2410 Female, age 72, unknown 100.6
2218 Male, age 76, both hemispheres 97.3
1942 Male, age 51, unknown 94.6
2021 Male, age 53, unknown 91.3
1915 Female, age 42, unknown 90.3
2223 Female, age 72, unknown 74.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.7
Samples: 139

Max nTPM: 39.1
Min nTPM: 6.6
Std nTPM: 6.1
Median nTPM: 18.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 39.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 36.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 36.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 29.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 29.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 29.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 28.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 28.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.5
FF:10158-103A5 76 years, female 54.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.4
Samples: 4

Max nTPM: 17.0
Min nTPM: 10.7
Sample A Female 14.5
Sample B Female 10.7
Sample C Male 17.0
Sample D Male 11.2
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 13.8
Sample A Female 14.9
Sample B Female 13.8
Sample C Male 21.9
Sample D Male 24.0
Periaqueductal gray
nTPM: 14.0
Samples: 3

Max nTPM: 15.7
Min nTPM: 11.2
Sample B Female 15.0
Sample C Male 15.7
Sample D Male 11.2
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 28.4
Min nTPM: 12.4
Sample A Female 19.9
Sample B Female 12.4
Sample C Male 28.4
Sample D Male 18.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 19.2
Min nTPM: 13.2
Sample A Male 13.2
Sample B Male 16.6
Sample C Female 19.2
Sample D Female 17.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
70305401 Antisense, RP_050609_04_B02, Mouse strain C57BL/6J (56 days, male) 7.0
74047748 Antisense, RP_051214_01_H04, Mouse strain C57BL/6J (56 days, male) 5.7

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