We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
LCN2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • LCN2
TISSUE PRIMARY DATA SALIVARY GLAND Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Salivary gland
Tissue proteome
Salivary gland
SALIVARY GLAND - Expression summary
Protein expression
Salivary glandi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1269.8 nTPM
HPA:123.3 nTPM
GTEx:1269.8 nTPM
FANTOM5:830.8 Scaled Tags Per Million

SALIVARY GLAND - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002695Antibody CAB016549Antibody CAB016550
Glandular cells LowNot detectedLow





SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.3
overview
Female, age 68
Salivary gland sample 216
nTPM: 81.7
Cell types%
Glandular cells:
45

Ductal cells:
25

Adipocytes:
5

Other cell types:
25

overview
Male, age 60
Salivary gland sample 217
nTPM: 117.2
Cell types%
Glandular cells:
55

Ductal cells:
20

Adipocytes:
5

Endothelial cells:
5

Other cell types:
15

overview
Female, age 21
Salivary gland sample 218
nTPM: 171
Cell types%
Glandular cells:
55

Ductal cells:
15

Adipocytes:
5

Endothelial cells:
5

Other cell types:
20


SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1269.8
GTEx sample id Sample description nTPM
Minor Salivary Gland
Average nTPM: 1269.8
Samples: 162

Max nTPM: 7089.5
Min nTPM: 40.9
Std nTPM: 1195.0
Median nTPM: 877.4
GTEX-18D9U-2226-SM-7KFTN 40-49 years, male 7089.5
GTEX-1RNSC-2926-SM-EV79L 60-69 years, male 5959.4
GTEX-12WSL-2126-SM-5GCNG 50-59 years, male 5891.2
GTEX-1R9K5-0626-SM-DPRZB 50-59 years, male 4361.8
GTEX-13OVI-2326-SM-5KM47 60-69 years, female 4231.8
GTEX-1HR9M-2526-SM-A9G3J 60-69 years, male 4060.0
GTEX-13113-1526-SM-5EGHV 60-69 years, female 3970.0
GTEX-13OVK-1826-SM-6PALE 40-49 years, male 3881.7
GTEX-Y5V6-2226-SM-4VDTC 60-69 years, male 3480.9
GTEX-1J1R8-1826-SM-AHZ3B 40-49 years, male 3385.4
GTEX-WH7G-2126-SM-4M1XU 40-49 years, male 3132.6
GTEX-15RJE-2726-SM-6LPJ1 40-49 years, male 3113.9
GTEX-1339X-2326-SM-5HL5B 40-49 years, male 3040.9
GTEX-1I4MK-1326-SM-B2LWT 50-59 years, female 2847.8
GTEX-1117F-3026-SM-5GZYU 60-69 years, female 2845.6
GTEX-ZC5H-2726-SM-5KLZW 40-49 years, female 2805.4
GTEX-WY7C-1426-SM-4OND1 50-59 years, male 2695.3
GTEX-1R9PO-2626-SM-E6CPU 60-69 years, female 2637.5
GTEX-1S82P-0726-SM-EVR4O 60-69 years, female 2620.4
GTEX-11WQK-2926-SM-5EQKT 50-59 years, male 2583.7
GTEX-1LVAO-2626-SM-EVR4S 60-69 years, male 2560.4
GTEX-13111-2326-SM-5LZUQ 50-59 years, male 2548.6
GTEX-ZXG5-2826-SM-5NQ8T 60-69 years, male 2548.6
GTEX-1AYD5-2726-SM-7MXVG 50-59 years, male 2461.3
GTEX-1AX9K-2126-SM-72D7K 50-59 years, male 2418.9
GTEX-WOFM-2126-SM-4OOSR 20-29 years, male 2344.6
GTEX-15EU6-2626-SM-7KUN4 50-59 years, male 2301.8
GTEX-1AX8Z-0626-SM-731EH 60-69 years, male 2294.0
GTEX-1EH9U-2926-SM-7DHLX 60-69 years, male 2293.9
GTEX-1KD4Q-2526-SM-CXZKL 40-49 years, male 2230.4
GTEX-146FR-1226-SM-5SIA7 60-69 years, female 2215.5
GTEX-1MGNQ-1926-SM-DTX8L 40-49 years, male 2126.1
GTEX-1C64O-0626-SM-7DHL1 60-69 years, male 2123.7
GTEX-1PPH8-1526-SM-E6CQO 20-29 years, male 2110.2
GTEX-18A7B-2826-SM-7KFTK 70-79 years, male 2052.9
GTEX-1PIEJ-0626-SM-DTX99 20-29 years, female 1939.8
GTEX-178AV-1426-SM-6LLID 40-49 years, male 1848.0
GTEX-11P82-0926-SM-5986X 20-29 years, male 1783.8
GTEX-13QJC-2326-SM-5Q5CD 60-69 years, female 1750.9
GTEX-1J8QM-1826-SM-A96TA 60-69 years, female 1733.2
GTEX-1HFI7-2426-SM-B2LXV 50-59 years, female 1698.6
GTEX-XGQ4-2626-SM-4AT6B 50-59 years, male 1696.9
GTEX-XMK1-2626-SM-4B65R 40-49 years, male 1637.6
GTEX-1QEPI-0626-SM-E76QE 60-69 years, female 1614.6
GTEX-1IDJC-1626-SM-AHZ2R 50-59 years, male 1574.6
GTEX-1LC47-2426-SM-DHXKK 60-69 years, male 1573.2
GTEX-1GMR2-2026-SM-7MKHK 50-59 years, male 1556.8
GTEX-1I6K7-0926-SM-A96SV 40-49 years, male 1542.4
GTEX-145ME-1626-SM-5RQI3 40-49 years, female 1493.4
GTEX-1445S-2926-SM-5O993 60-69 years, male 1445.1
GTEX-YF7O-2226-SM-5CVN8 50-59 years, male 1437.5
GTEX-ZT9W-2126-SM-51MSF 50-59 years, male 1339.4
GTEX-1IY9M-2926-SM-A96TH 60-69 years, male 1337.1
GTEX-15CHC-1226-SM-686ZH 60-69 years, female 1329.6
GTEX-WHSB-2326-SM-4M1XK 50-59 years, male 1317.8
GTEX-ZA64-1726-SM-5CVMF 20-29 years, male 1317.3
GTEX-1LKK1-2926-SM-EVR4Z 50-59 years, female 1309.2
GTEX-1I6K6-0626-SM-ARU7J 30-39 years, male 1277.1
GTEX-1GTWX-2526-SM-9JGHG 60-69 years, male 1255.9
GTEX-1GPI7-0326-SM-7MKH6 20-29 years, male 1242.9
GTEX-11ZTT-2226-SM-5CVLP 60-69 years, female 1237.7
GTEX-1JN1M-2426-SM-ARU93 60-69 years, female 1177.2
GTEX-X15G-2126-SM-4PQZR 50-59 years, female 1136.5
GTEX-14PJ3-1526-SM-664O9 50-59 years, male 1118.8
GTEX-1314G-2026-SM-5LZUM 30-39 years, male 1083.8
GTEX-1GF9X-0226-SM-7P8SM 40-49 years, female 1080.8
GTEX-1P4AB-2926-SM-EXOJR 50-59 years, male 1076.5
GTEX-1QCLZ-2526-SM-EXUST 60-69 years, female 1075.0
GTEX-1GN1W-2526-SM-9JGHX 50-59 years, female 1065.9
GTEX-WFJO-2026-SM-4LVM3 30-39 years, male 1062.1
GTEX-ZG7Y-2426-SM-DO11H 50-59 years, male 1058.3
GTEX-17KNJ-2726-SM-7KFRE 50-59 years, male 1053.0
GTEX-12WSM-1826-SM-5BC64 60-69 years, male 1015.4
GTEX-1HSGN-0626-SM-A9G2E 40-49 years, female 990.8
GTEX-1OJC4-3126-SM-EXOJK 50-59 years, female 975.2
GTEX-13G51-2426-SM-5LZY8 60-69 years, male 965.0
GTEX-ZP4G-1926-SM-57WDZ 20-29 years, female 958.7
GTEX-1HSEH-1826-SM-A96SA 60-69 years, male 948.6
GTEX-1J8EW-2826-SM-A96T9 60-69 years, female 932.2
GTEX-18A67-0626-SM-7KFSL 50-59 years, male 918.1
GTEX-1R9K4-0526-SM-E76P1 60-69 years, male 881.6
GTEX-XV7Q-2426-SM-4BRV8 40-49 years, female 873.2
GTEX-1KD5A-2226-SM-EV79U 50-59 years, male 872.0
GTEX-13O21-1926-SM-5MR39 50-59 years, male 870.4
GTEX-Y3I4-1926-SM-4TT8L 50-59 years, male 866.3
GTEX-X261-2426-SM-4PQZU 50-59 years, male 848.7
GTEX-Y5LM-1826-SM-4VDT9 40-49 years, female 834.1
GTEX-1MCQQ-2226-SM-DLHC4 60-69 years, male 832.8
GTEX-14PN4-2526-SM-686ZG 50-59 years, male 823.2
GTEX-1B932-0626-SM-731EM 40-49 years, female 812.6
GTEX-1JN6P-2526-SM-CNNPX 60-69 years, male 809.2
GTEX-15SHV-2226-SM-6M464 60-69 years, male 793.5
GTEX-18QFQ-0626-SM-718AW 30-39 years, male 790.3
GTEX-11TUW-2426-SM-5EQKB 60-69 years, male 787.2
GTEX-1JKYR-0726-SM-AHZ3K 20-29 years, male 775.7
GTEX-131XF-2826-SM-5EGKH 60-69 years, male 764.2
GTEX-11P81-2026-SM-5P9GT 30-39 years, female 727.6
GTEX-11NV4-1926-SM-5N9D4 60-69 years, male 696.0
GTEX-1GN1V-2926-SM-9JGI3 60-69 years, male 689.1
GTEX-13JVG-2926-SM-5J2N9 60-69 years, male 687.8
GTEX-1HSMQ-0926-SM-A96SI 50-59 years, male 673.6
GTEX-1KANC-1326-SM-CYPT8 50-59 years, female 667.6
GTEX-1MCC2-2226-SM-EV7AJ 30-39 years, female 659.9
GTEX-14E1K-2626-SM-664OJ 50-59 years, male 617.9
GTEX-1B8KZ-1726-SM-73KV7 50-59 years, male 606.8
GTEX-1B8SF-1826-SM-731DJ 60-69 years, male 604.2
GTEX-1QP9N-2026-SM-DPRZT 30-39 years, male 600.7
GTEX-14PJN-1726-SM-69LO7 30-39 years, male 590.3
GTEX-ZAB5-2326-SM-5IJFR 50-59 years, male 587.1
GTEX-1S83E-0626-SM-E9TKC 40-49 years, male 581.5
GTEX-ZF29-2126-SM-DNZYX 60-69 years, female 578.4
GTEX-Y111-2626-SM-4TT24 50-59 years, male 577.7
GTEX-1OJC3-1026-SM-E6CQK 20-29 years, male 547.2
GTEX-ZPU1-2326-SM-57WEP 40-49 years, male 536.5
GTEX-YB5K-1726-SM-5IFIZ 40-49 years, female 513.9
GTEX-1QMI2-0426-SM-EWRND 60-69 years, male 513.5
GTEX-1B97J-2126-SM-79OL6 50-59 years, female 509.7
GTEX-ZQUD-2126-SM-51MSY 30-39 years, male 492.7
GTEX-ZQG8-2126-SM-4YCF1 60-69 years, female 487.2
GTEX-1C4CL-2026-SM-731EB 30-39 years, male 484.0
GTEX-1C6VR-0726-SM-7P8OV 60-69 years, male 454.5
GTEX-1CB4I-2526-SM-7MKG1 50-59 years, male 413.2
GTEX-1IDJD-2526-SM-C1YSA 30-39 years, male 402.0
GTEX-1H1CY-2326-SM-9OSXW 60-69 years, female 401.6
GTEX-1IE54-0826-SM-AHZ2Z 40-49 years, female 399.4
GTEX-1I1HK-2526-SM-A96SM 60-69 years, male 376.5
GTEX-ZLFU-2226-SM-EXUS7 40-49 years, male 361.9
GTEX-1A3MV-1726-SM-72D68 30-39 years, male 350.1
GTEX-13NYB-2426-SM-5IFF4 40-49 years, male 348.1
GTEX-1LVA9-2526-SM-EVR5H 50-59 years, male 317.8
GTEX-111FC-2926-SM-5GZY7 60-69 years, male 314.4
GTEX-13QBU-2126-SM-5KLZN 40-49 years, female 314.2
GTEX-1NSGN-0626-SM-E9J35 50-59 years, male 310.2
GTEX-X3Y1-1926-SM-4PQZO 40-49 years, male 282.4
GTEX-13OVL-2926-SM-5IFG3 50-59 years, male 268.8
GTEX-X5EB-1726-SM-4E3J7 40-49 years, male 268.2
GTEX-ZE7O-2926-SM-51MSG 50-59 years, female 254.2
GTEX-13CF2-2426-SM-5LZYL 60-69 years, male 250.3
GTEX-14JIY-3026-SM-6EU1R 60-69 years, male 245.9
GTEX-WYVS-2026-SM-4RGNS 40-49 years, female 230.2
GTEX-1C64N-2926-SM-79OLM 50-59 years, male 230.0
GTEX-1H4P4-2026-SM-9WPNV 50-59 years, male 225.9
GTEX-14B4R-1426-SM-5Q5CG 30-39 years, male 224.4
GTEX-1GZ2Q-2526-SM-9KNVW 40-49 years, male 223.5
GTEX-1RAZA-0626-SM-EAZ4H 20-29 years, male 208.7
GTEX-13VXT-1726-SM-5IFF5 20-29 years, female 197.0
GTEX-12WSN-2226-SM-5DUXT 40-49 years, male 177.5
GTEX-1IOXB-2826-SM-AHZ32 50-59 years, male 175.7
GTEX-11ZTS-3026-SM-5EQM7 60-69 years, female 167.9
GTEX-11EQ9-2026-SM-5P9JI 30-39 years, male 167.8
GTEX-1192X-2926-SM-5N9BA 50-59 years, male 166.9
GTEX-17MFQ-1626-SM-7938Z 20-29 years, male 163.2
GTEX-1AMEY-1126-SM-72D79 30-39 years, female 149.7
GTEX-11EMC-2526-SM-5PNVU 60-69 years, female 146.6
GTEX-1LBAC-0626-SM-D3L9T 20-29 years, male 146.5
GTEX-1LSNL-2626-SM-EV7AT 50-59 years, male 142.5
GTEX-1HCU7-0126-SM-C1YR3 50-59 years, male 123.0
GTEX-12BJ1-2226-SM-5BC6G 60-69 years, male 119.9
GTEX-1POEN-2226-SM-DPRXV 30-39 years, female 108.4
GTEX-ZLWG-2026-SM-DO11F 50-59 years, female 77.4
GTEX-1R9PM-1726-SM-E8VOA 20-29 years, male 50.2
GTEX-131XH-2626-SM-5GCNP 50-59 years, male 40.9
Show allShow less

SALIVARY GLAND - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

830.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Parotid gland
Scaled Tags Per Million: 410.7
FF:10199-103F1 23 years, male 410.7
Salivary gland
Scaled Tags Per Million: 830.8
FF:10093-102C3 16-60 years, mixed 830.8
Submaxillary gland
Scaled Tags Per Million: 543.7
FF:10202-103F4 24 years, male 543.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org