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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:91.2 nTPM
FANTOM5:152.0 Scaled Tags Per Million
Pig:103.4 nTPM

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 40.9
2497 Male, age 66, unknown 44.6
2396 Male, age 61, right hemisphere 44.1
2032 Female, age 42, unknown 34.0
Centromedial thalamic nucleus
nTPM: 30.5
2279 Female, age 85, left hemisphere 30.5
2401 Male, age 76, right hemisphere 30.4
Habenula
nTPM: 57.1
1957 Male, age 80, both hemispheres 64.6
2276 Male, age 66, unknown 59.2
2252 Male, age 62, unknown 58.8
2203 Male, age 61, left hemisphere 45.8
Lateral geniculate body
nTPM: 44.0
2575 Female, age 94, right hemisphere 85.8
2857 Male, age 74, right hemisphere 63.9
2841 Male, age 80, both hemispheres 41.7
1953 Male, age 62, unknown 38.7
2035 Female, age 72, unknown 36.4
2399 Male, age 61, left hemisphere 30.7
2659 Male, age 66, unknown 29.5
2106 Female, age 67, right hemisphere 25.6
Lateral thalamic nuclei
nTPM: 64.5
2573 Female, age 94, left hemisphere 88.5
2765 Female, age 67, both hemispheres 72.2
2661 Female, age 72, unknown 55.3
1903 Male, age 76, left hemisphere 55.2
2577 Male, age 74, both hemispheres 51.5
Medial dorsal thalamic nucleus
nTPM: 64.9
2572 Female, age 94, right hemisphere 159.4
2492 Male, age 75, right hemisphere 67.9
1930 Female, age 42, unknown 67.1
1971 Male, age 61, right hemisphere 64.5
1810 Male, age 48, unknown 63.9
2402 Female, age 67, both hemispheres 60.2
2026 Male, age 62, unknown 59.7
2576 Male, age 74, both hemispheres 57.5
2498 Male, age 66, unknown 57.4
2039 Female, age 72, unknown 55.3
1859 Male, age 76, both hemispheres 53.9
2660 Female, age 72, unknown 40.1
2283 Male, age 80, right hemisphere 36.9
Medial geniculate body
nTPM: 57.8
2650 Female, age 94, left hemisphere 92.1
2657 Male, age 74, right hemisphere 69.5
2049 Male, age 76, both hemispheres 58.1
2217 Female, age 72, unknown 47.2
2207 Male, age 80, right hemisphere 46.9
1811 Female, age 42, unknown 46.0
2571 Male, age 75, right hemisphere 44.7
Nucleus reuniens
nTPM: 61.6
2212 Female, age 67, left hemisphere 80.8
2205 Male, age 80, left hemisphere 63.6
2210 Female, age 85, left hemisphere 40.3
Nucleus rhomboideus
nTPM: 61.6
2213 Female, age 67, left hemisphere 94.1
2206 Male, age 80, both hemispheres 55.8
2280 Female, age 85, left hemisphere 35.0
Posterior thalamic nucleus
nTPM: 91.2
2649 Female, age 94, both hemispheres 158.8
2655 Male, age 74, right hemisphere 77.9
2495 Female, age 67, right hemisphere 77.1
2266 Male, age 76, right hemisphere 50.8
Pulvinar
nTPM: 46.0
2499 Male, age 66, unknown 64.6
2214 Male, age 76, right hemisphere 61.4
2582 Female, age 72, unknown 54.6
2496 Female, age 67, right hemisphere 48.3
1929 Male, age 48, unknown 46.6
1932 Male, age 80, right hemisphere 41.4
1972 Male, age 62, unknown 39.1
1899 Female, age 42, unknown 35.7
2398 Male, age 61, left hemisphere 34.8
2724 Male, age 74, right hemisphere 33.8
Subthalamic nucleus
nTPM: 49.3
2658 Male, age 74, both hemispheres 82.7
2056 Female, age 72, unknown 51.5
2275 Male, age 66, unknown 48.1
2216 Male, age 48, unknown 46.7
2282 Male, age 61, both hemispheres 44.3
2124 Male, age 62, unknown 42.7
2779 Female, age 42, unknown 39.7
2406 Female, age 72, unknown 38.9
Ventral posterolateral thalamic nucleus
nTPM: 50.4
2570 Male, age 75, right hemisphere 71.9
2197 Male, age 80, both hemispheres 66.4
2578 Male, age 74, both hemispheres 60.7
2397 Male, age 61, right hemisphere 37.8
2581 Female, age 72, unknown 37.7
2740 Male, age 76, right hemisphere 27.7
Ventral posteromedial thalamic nucleus
nTPM: 59.0
2281 Male, age 75, right hemisphere 67.8
2127 Male, age 76, right hemisphere 66.5
2758 Male, age 80, both hemispheres 61.2
2202 Male, age 61, left hemisphere 58.2
2653 Male, age 74, both hemispheres 41.5
Ventral thalamic nuclei
nTPM: 46.0
2291 Female, age 72, unknown 67.7
1912 Female, age 42, unknown 53.3
2285 Male, age 62, unknown 50.0
2204 Male, age 80, both hemispheres 49.9
1860 Male, age 76, both hemispheres 49.2
1845 Male, age 48, unknown 42.2
2580 Male, age 66, unknown 39.0
2652 Male, age 74, left hemisphere 34.7
2858 Female, age 72, unknown 28.2
Zona incerta
nTPM: 41.2
2822 Male, age 74, right hemisphere 51.2
2215 Male, age 66, unknown 47.2
2208 Male, age 80, right hemisphere 44.4
2403 Male, age 62, unknown 36.9
2663 Female, age 72, unknown 26.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

152.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 152.0
FF:10154-103A1 76 years, female 152.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.4
Pig sample Sample description nTPM
Thalamus
nTPM: 103.4
Samples: 4

Max nTPM: 230.8
Min nTPM: 14.6
Sample A Female 23.0
Sample B Female 14.6
Sample C Male 145.2
Sample D Male 230.8

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