MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:237.1 nTPM
HPA Brain:256.6 nTPM
GTEx:237.1 nTPM
FANTOM5:98.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 256.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 201.9
2828 Female, age 72, unknown 291.3
2586 Male, age 75, left hemisphere 256.1
1870 Female, age 42, unknown 229.8
1827 Male, age 72, unknown 228.0
2411 Female, age 72, unknown 201.3
2666 Male, age 74, left hemisphere 180.5
1833 Male, age 53, unknown 176.2
2219 Male, age 76, both hemispheres 163.0
1830 Male, age 51, unknown 154.0
2019 Male, age 18, unknown 138.7
Dorsal raphe nucleus
nTPM: 256.6
2016 Female, age 72, unknown 293.0
2047 Male, age 72, unknown 269.6
2298 Female, age 72, unknown 255.4
1828 Male, age 53, unknown 252.6
2750 Male, age 76, both hemispheres 212.6
Inferior colliculus
nTPM: 247.3
2097 Female, age 72, unknown 276.0
1848 Female, age 42, unknown 253.6
2849 Male, age 72, unknown 238.2
1890 Male, age 53, unknown 221.4
Median raphe nucleus
nTPM: 173.5
2220 Male, age 76, midline 173.5
Periaquaductal grey, anterior
nTPM: 255.5
1795 Male, age 51, unknown 275.7
1947 Male, age 18, unknown 246.5
2502 Female, age 75, unknown 244.4
Periaquaductal grey, dorsal
nTPM: 233.6
1840 Male, age 53, unknown 303.9
2464 Female, age 72, unknown 253.6
2850 Male, age 76, both hemispheres 198.2
1831 Male, age 72, unknown 178.7
Periaquaductal grey, lateral
nTPM: 208.3
2053 Male, age 18, unknown 237.9
2140 Male, age 76, both hemispheres 225.2
2272 Male, age 74, both hemispheres 161.8
Pretectal area
nTPM: 229.1
2224 Female, age 72, unknown 277.0
1944 Female, age 72, unknown 275.7
2667 Female, age 75, unknown 271.5
1816 Male, age 51, unknown 257.3
2825 Male, age 18, unknown 244.7
1817 Female, age 42, unknown 236.4
2316 Male, age 76, right hemisphere 218.0
1815 Male, age 53, unknown 209.6
2273 Male, age 74, both hemispheres 197.2
2007 Male, age 72, unknown 167.0
2407 Male, age 75, both hemispheres 165.6
Red nucleus
nTPM: 165.6
2503 Female, age 72, unknown 209.2
2227 Male, age 72, unknown 195.2
2769 Male, age 72, unknown 188.3
1954 Female, age 42, unknown 185.5
2725 Female, age 75, unknown 178.6
1821 Female, age 72, unknown 173.2
1904 Male, age 53, unknown 158.1
2588 Male, age 74, left hemisphere 151.1
2823 Male, age 76, right hemisphere 143.2
1865 Male, age 51, unknown 140.3
2785 Male, age 18, unknown 139.2
2584 Male, age 75, left hemisphere 124.8
Substantia nigra
nTPM: 243.4
1916 Female, age 42, unknown 322.3
2241 Male, age 72, unknown 288.0
2699 Male, age 18, unknown 287.5
1851 Male, age 51, unknown 251.5
2665 Male, age 74, both hemispheres 245.1
1941 Male, age 53, unknown 225.5
1889 Female, age 72, unknown 225.4
2409 Female, age 72, unknown 210.1
2590 Female, age 75, unknown 207.1
2583 Male, age 75, right hemisphere 171.6
Superior colliculus
nTPM: 209.8
2664 Male, age 75, both hemispheres 239.6
2261 Male, age 18, unknown 239.0
1796 Male, age 53, unknown 227.0
2087 Female, age 72, unknown 223.1
1839 Male, age 51, unknown 215.6
1895 Male, age 76, right hemisphere 194.3
2587 Male, age 74, left hemisphere 194.0
2668 Female, age 75, unknown 192.0
1913 Female, age 42, unknown 188.7
1995 Male, age 72, unknown 184.9
Ventral tegmental area
nTPM: 218.2
1915 Female, age 42, unknown 256.1
1942 Male, age 51, unknown 241.3
2021 Male, age 53, unknown 222.5
2410 Female, age 72, unknown 222.0
2218 Male, age 76, both hemispheres 197.7
2223 Female, age 72, unknown 169.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 237.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 237.1
Samples: 139

Max nTPM: 633.5
Min nTPM: 68.3
Std nTPM: 108.4
Median nTPM: 212.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 633.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 616.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 592.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 553.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 542.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 534.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 452.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 422.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 421.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 413.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 407.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 98.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.7
FF:10158-103A5 76 years, female 98.7

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