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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:109.9 nTPM
HPA Brain:140.8 nTPM
GTEx:109.9 nTPM
FANTOM5:412.6 Scaled Tags Per Million
Pig:146.1 nTPM
Mouse:65.9 nTPM
Allen mouse:3.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.8
Sample id Sample description nTPM
Amygdala
nTPM: 140.8
2514 Male, age 75, right hemisphere 196.3
1987 Female, age 91, left hemisphere 160.5
2517 Female, age 94, left hemisphere 126.1
2695 Female, age 67, right hemisphere 115.1
2814 Male, age 76, right hemisphere 106.0
Basal amygdala
nTPM: 125.8
2609 Male, age 75, right hemisphere 198.7
2243 Female, age 91, right hemisphere 121.7
1955 Male, age 76, both hemispheres 119.4
2110 Male, age 80, left hemisphere 118.2
2685 Female, age 94, left hemisphere 105.9
2827 Female, age 67, right hemisphere 90.6
Central amygdala
nTPM: 128.9
2515 Male, age 75, right hemisphere 184.4
2826 Female, age 94, left hemisphere 120.5
2239 Male, age 80, left hemisphere 120.0
2701 Female, age 91, right hemisphere 110.2
1905 Male, age 76, both hemispheres 109.2
Corticomedial amygdala
nTPM: 136.0
2428 Male, age 75, right hemisphere 208.3
2829 Male, age 80, left hemisphere 137.2
2242 Female, age 91, right hemisphere 128.9
2240 Male, age 76, both hemispheres 127.2
2429 Female, age 94, left hemisphere 126.8
2535 Female, age 67, right hemisphere 87.5
Lateral amygdala
nTPM: 120.1
2516 Male, age 75, right hemisphere 180.0
2256 Male, age 80, left hemisphere 132.7
1883 Male, age 76, both hemispheres 113.0
2255 Female, age 91, right hemisphere 104.3
2830 Female, age 67, right hemisphere 96.9
2534 Female, age 94, left hemisphere 93.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 109.9
Samples: 152

Max nTPM: 362.4
Min nTPM: 9.3
Std nTPM: 38.7
Median nTPM: 110.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 362.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 183.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 176.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 174.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 173.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 172.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 170.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 170.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 164.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 163.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 163.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 157.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 156.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 153.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 152.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 151.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 150.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 148.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 148.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 148.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 146.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 146.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 144.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 144.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 142.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 142.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 141.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 140.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 140.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 136.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 136.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 135.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 134.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 134.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 134.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 132.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 132.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 131.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 130.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 130.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 130.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 129.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 128.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 128.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 128.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 126.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 126.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 126.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 126.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 125.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 124.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 123.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 122.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 121.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 121.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 120.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 120.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 120.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 120.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 119.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 118.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 117.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 115.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 114.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 114.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 112.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 112.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 112.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 112.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 111.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 111.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 111.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 111.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 111.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 110.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 109.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 108.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 106.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 106.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 105.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 103.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 103.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 102.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 100.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 100.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 99.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 98.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 98.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 98.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 97.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 97.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 97.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 96.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 95.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 94.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 93.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 93.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 92.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 91.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 91.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 91.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 90.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 89.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 89.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 86.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 86.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 85.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 84.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 83.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 83.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 83.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 83.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 83.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 82.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 82.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 82.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 81.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 81.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 81.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 80.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 80.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 79.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 78.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 77.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 77.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 76.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 76.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 74.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 73.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 70.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 68.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 68.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 68.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 67.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 67.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 65.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 65.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 63.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 59.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 58.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 57.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 57.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 50.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 41.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 37.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 30.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

412.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 412.6
FF:10151-102I7 76 years, female 412.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.1
Pig sample Sample description nTPM
Amygdala
nTPM: 146.1
Samples: 4

Max nTPM: 156.4
Min nTPM: 138.2
Sample A Female 156.4
Sample B Female 147.8
Sample C Male 138.2
Sample D Male 142.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 65.9
Samples: 4

Max nTPM: 69.7
Min nTPM: 62.7
Sample A Male 65.0
Sample B Male 66.0
Sample C Female 62.7
Sample D Female 69.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.6
68795422 Antisense, RP_041122_02_E04, Mouse strain C57BL/6J (56 days, male) 3.6

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