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NKX6-2
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:106.0 nTPM
HPA Brain:73.2 nTPM
GTEx:106.0 nTPM
FANTOM5:49.6 Scaled Tags Per Million
Pig:26.5 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 59.1
2194 Female, age 79, both hemispheres 74.2
1981 Female, age 72, midline 70.9
2816 Male, age 47, midline 61.5
2565 Male, age 75, midline 46.7
2048 Male, age 55, midline 42.1
Cervical spinal cord, dorsal horn
nTPM: 67.2
2296 Male, age 66, both hemispheres 110.9
2173 Female, age 72, unknown 96.7
2069 Male, age 47, both hemispheres 62.4
1877 Male, age 55, unknown 60.0
2297 Male, age 75, both hemispheres 40.3
2721 Male, age 90, both hemispheres 32.7
Cervical spinal cord, ventral horn
nTPM: 73.2
2068 Male, age 55, unknown 104.0
2820 Female, age 79, both hemispheres 78.9
2480 Male, age 75, both hemispheres 76.5
2809 Male, age 90, both hemispheres 75.2
2295 Male, age 66, both hemispheres 61.6
2098 Female, age 72, unknown 43.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 106.0
Samples: 159

Max nTPM: 272.4
Min nTPM: 28.0
Std nTPM: 39.5
Median nTPM: 101.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 272.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 235.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 212.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 199.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 196.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 192.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 178.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 176.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 170.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 164.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 161.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 160.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 158.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 158.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 156.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 154.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 154.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 152.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 152.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 151.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 150.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 149.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 148.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 146.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 143.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 141.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 139.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 139.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 138.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 137.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 136.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 135.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 134.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 132.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 132.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 131.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 130.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 130.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 129.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 129.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 128.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 127.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 126.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 125.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 125.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 124.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 122.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 122.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 119.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 119.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 118.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 118.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 118.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 117.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 117.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 117.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 116.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 116.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 115.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 115.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 113.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 113.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 112.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 111.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 111.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 110.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 110.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 110.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 108.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 107.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 107.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 106.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 106.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 105.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 105.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 105.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 104.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 103.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 101.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 101.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 100.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 100.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 99.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 98.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 97.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 97.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 97.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 96.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 96.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 95.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 95.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 95.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 94.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 94.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 94.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 93.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 92.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 91.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 89.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 88.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 88.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 86.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 85.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 85.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 85.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 85.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 84.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 83.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 83.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 83.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 82.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 82.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 82.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 82.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 81.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 80.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 79.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 79.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 79.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 79.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 78.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 77.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 77.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 76.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 73.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 72.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 72.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 70.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 68.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 68.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 68.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 67.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 67.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 66.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 66.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 63.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 63.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 62.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 62.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 61.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 60.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 59.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 58.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 58.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 58.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 56.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 53.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 49.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 48.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 47.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 45.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 45.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 43.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 42.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 39.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 32.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 28.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 49.6
FF:10181-103D1 60 years, female 63.0
FF:10159-103A6 76 years, female 36.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 22.7
Samples: 4

Max nTPM: 28.5
Min nTPM: 15.3
Sample A Female 28.5
Sample B Female 21.3
Sample C Male 15.3
Sample D Male 25.8
Ventral spinal cord
nTPM: 26.5
Samples: 4

Max nTPM: 29.1
Min nTPM: 23.0
Sample A Female 24.8
Sample B Female 29.1
Sample C Male 23.0
Sample D Male 29.0

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