BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.0 nTPM
HPA Brain:117.1 nTPM
GTEx:39.0 nTPM
FANTOM5:79.2 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:2.3 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 117.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.8
2288 Male, age 75, left hemisphere 64.2
1781 Male, age 74, unknown 41.0
2481 Female, age 94, left hemisphere 38.0
2846 Female, age 79, unknown 34.0
2290 Female, age 72, unknown 30.1
1854 Male, age 80, left hemisphere 28.3
2289 Male, age 61, right hemisphere 24.8
1857 Female, age 85, left hemisphere 18.1
Globus pallidus, externus
nTPM: 117.1
2567 Female, age 72, unknown 143.8
2646 Male, age 61, right hemisphere 142.1
1996 Male, age 80, right hemisphere 118.3
2772 Female, age 79, unknown 107.8
2395 Male, age 75, both hemispheres 73.3
Globus pallidus, internus
nTPM: 115.1
2111 Female, age 85, right hemisphere 173.1
2566 Female, age 72, unknown 140.7
2778 Female, age 91, both hemispheres 134.3
2037 Male, age 80, right hemisphere 95.9
2287 Male, age 75, right hemisphere 88.7
2483 Female, age 94, right hemisphere 88.1
1818 Male, age 74, unknown 84.6
Nucleus accumbens
nTPM: 50.3
2391 Female, age 94, left hemisphere 91.5
2732 Male, age 80, right hemisphere 82.4
2698 Female, age 72, unknown 59.1
2286 Male, age 75, left hemisphere 50.0
1806 Female, age 85, left hemisphere 40.3
1783 Male, age 74, unknown 37.2
2824 Male, age 61, right hemisphere 26.3
1856 Female, age 91, right hemisphere 16.1
Nucleus basalis of Meynert
nTPM: 62.2
2569 Male, age 61, both hemispheres 122.9
2821 Male, age 75, both hemispheres 50.6
2484 Female, age 94, left hemisphere 42.8
2393 Male, age 80, right hemisphere 32.4
Nucleus of the diagonal band
nTPM: 14.1
1979 Male, age 74, unknown 22.9
1812 Female, age 91, both hemispheres 19.6
2029 Male, age 61, right hemisphere 10.3
2195 Female, age 85, both hemispheres 9.8
2775 Male, age 80, right hemisphere 8.2
Putamen
nTPM: 45.3
2647 Male, age 75, left hemisphere 70.7
2489 Female, age 72, unknown 59.8
2482 Female, age 94, left hemisphere 55.3
1829 Male, age 74, unknown 47.7
1937 Female, age 91, right hemisphere 40.2
2466 Female, age 79, unknown 29.7
1838 Male, age 80, right hemisphere 13.5
Septal nuclei
nTPM: 24.6
2394 Male, age 61, left hemisphere 55.5
2199 Male, age 80, right hemisphere 29.2
2059 Female, age 85, both hemispheres 27.9
2629 Female, age 94, right hemisphere 19.3
2009 Female, age 91, both hemispheres 15.8
2031 Female, age 72, unknown 14.6
1960 Male, age 74, unknown 10.0
Stria terminalis, bed nucleus
nTPM: 26.3
1974 Female, age 91, both hemispheres 34.0
2201 Male, age 74, unknown 28.7
2486 Female, age 94, both hemispheres 16.3

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 39.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.3
Samples: 246

Max nTPM: 103.1
Min nTPM: 2.2
Std nTPM: 14.7
Median nTPM: 22.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 103.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 89.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 78.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 70.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 70.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 68.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 67.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 62.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 59.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 58.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 55.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 17.6
Samples: 246

Max nTPM: 111.4
Min nTPM: 3.1
Std nTPM: 14.1
Median nTPM: 13.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 111.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 92.0
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 61.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 60.0
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 59.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 59.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 57.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 54.3
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 53.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 49.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 49.6
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Brain - Putamen (basal ganglia)
Average nTPM: 39.0
Samples: 205

Max nTPM: 178.4
Min nTPM: 5.0
Std nTPM: 20.8
Median nTPM: 34.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 178.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 115.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 98.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 92.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 90.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 88.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 83.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 82.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 81.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 81.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 81.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.6
FF:10164-103B2 76 years, female 13.6
Nucleus accumbens
Scaled Tags Per Million: 18.4
FF:10037-101F1 23-56 years, mixed 18.4
Putamen
Scaled Tags Per Million: 21.5
FF:10176-103C5 60 years, female 21.5
Globus pallidus
Scaled Tags Per Million: 79.2
FF:10161-103A8 76 years, female 84.6
FF:10175-103C4 60 years, female 73.7

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 17.0
Pig sample Sample description nTPM
Caudate
nTPM: 5.6
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.8
Sample A Female 6.4
Sample B Female 5.4
Sample C Male 5.6
Sample D Male 4.8
Putamen
nTPM: 17.0
Samples: 4

Max nTPM: 29.6
Min nTPM: 7.4
Sample A Female 29.6
Sample B Female 7.4
Sample C Male 13.4
Sample D Male 17.5
Septum
nTPM: 11.4
Samples: 4

Max nTPM: 14.0
Min nTPM: 8.6
Sample A Female 12.1
Sample B Female 8.6
Sample C Male 14.0
Sample D Male 10.8
Ventral pallidum
nTPM: 16.4
Samples: 4

Max nTPM: 24.9
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 14.7
Sample C Male 24.9
Sample D Male 20.2

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 2.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 0.4
Sample A Male 1.4
Sample B Male 5.6
Sample C Female 1.3
Sample D Female 0.4
Septum
nTPM: 2.3
Samples: 4

Max nTPM: 4.0
Min nTPM: 1.4
Sample A Male 1.7
Sample B Male 2.0
Sample C Female 4.0
Sample D Female 1.4
Ventral forebrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.0
Sample A Male 1.3
Sample B Male 1.0
Sample C Female 1.7
Sample D Female 1.8

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