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HSD17B12
HPA
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  • HSD17B12
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

HSD17B12
Synonyms KAR, SDR12C1
Gene descriptioni

Full gene name according to HGNC.

Hydroxysteroid 17-beta dehydrogenase 12
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband p11.2
Chromosome location (bp) 43680680 - 43856617
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000149084 (version 109)
Entrez gene 51144
HGNC HGNC:18646
UniProt Q53GQ0 (UniProt - Evidence at protein level)
neXtProt NX_Q53GQ0
GeneCards HSD17B12
Antibodypedia HSD17B12 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Catalyzes the second of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme has a 3-ketoacyl-CoA reductase activity, reducing 3-ketoacyl-CoA to 3-hydroxyacyl-CoA, within each cycle of fatty acid elongation. Thereby, it may participate in the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators. May also catalyze the transformation of estrone (E1) into estradiol (E2) and play a role in estrogen formation.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Oxidoreductase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Lipid biosynthesis, Lipid metabolism, Steroid biosynthesis
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

NADP
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a very important 17beta-hydroxysteroid dehydrogenase (17beta-HSD) that converts estrone into estradiol in ovarian tissue. This enzyme is also involved in fatty acid elongation. [provided by RefSeq, Oct 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
HSD17B12-201
ENSP00000278353
ENST00000278353
Q53GQ0
[Direct mapping] Very-long-chain 3-oxoacyl-CoA reductase
Show all
Enzymes
   ENZYME proteins
   Oxidoreductases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001968 [fibronectin binding]
GO:0004303 [estradiol 17-beta-dehydrogenase activity]
GO:0005515 [protein binding]
GO:0005518 [collagen binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0006694 [steroid biosynthetic process]
GO:0006703 [estrogen biosynthetic process]
GO:0008201 [heparin binding]
GO:0009923 [fatty acid elongase complex]
GO:0010811 [positive regulation of cell-substrate adhesion]
GO:0016020 [membrane]
GO:0016491 [oxidoreductase activity]
GO:0016509 [long-chain-3-hydroxyacyl-CoA dehydrogenase activity]
GO:0030198 [extracellular matrix organization]
GO:0031012 [extracellular matrix]
GO:0035338 [long-chain fatty-acyl-CoA biosynthetic process]
GO:0044594 [17-beta-hydroxysteroid dehydrogenase (NAD+) activity]
GO:0050062 [long-chain-fatty-acyl-CoA reductase activity]
GO:0102339 [3-oxo-arachidoyl-CoA reductase activity]
GO:0102340 [3-oxo-behenoyl-CoA reductase activity]
GO:0102341 [3-oxo-lignoceroyl-CoA reductase activity]
GO:0102342 [3-oxo-cerotoyl-CoA reductase activity]
Show all
312 aa
34.3 kDa
No 1
HSD17B12-202
ENSP00000379052
ENST00000395700
Q53GQ0
[Direct mapping] Very-long-chain 3-oxoacyl-CoA reductase
Show all
Enzymes
   ENZYME proteins
   Oxidoreductases
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0004303 [estradiol 17-beta-dehydrogenase activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006629 [lipid metabolic process]
GO:0006633 [fatty acid biosynthetic process]
GO:0006694 [steroid biosynthetic process]
GO:0006703 [estrogen biosynthetic process]
GO:0009923 [fatty acid elongase complex]
GO:0016020 [membrane]
GO:0016491 [oxidoreductase activity]
GO:0016509 [long-chain-3-hydroxyacyl-CoA dehydrogenase activity]
GO:0035338 [long-chain fatty-acyl-CoA biosynthetic process]
GO:0044594 [17-beta-hydroxysteroid dehydrogenase (NAD+) activity]
GO:0050062 [long-chain-fatty-acyl-CoA reductase activity]
GO:0102339 [3-oxo-arachidoyl-CoA reductase activity]
GO:0102340 [3-oxo-behenoyl-CoA reductase activity]
GO:0102341 [3-oxo-lignoceroyl-CoA reductase activity]
GO:0102342 [3-oxo-cerotoyl-CoA reductase activity]
Show all
98 aa
10.3 kDa
No 1
HSD17B12-206
ENSP00000436582
ENST00000531185
E9PI21
[Direct mapping] Very-long-chain 3-oxoacyl-CoA reductase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
Show all
164 aa
17.7 kDa
No 1
HSD17B12-213
ENSP00000490421
ENST00000637401
A0A1B0GV93
[Direct mapping] Very-long-chain 3-oxoacyl-CoA reductase
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0016491 [oxidoreductase activity]
Show all
276 aa
30.4 kDa
No 2
HSD17B12-214
ENSP00000490701
ENST00000638034
A0A1B0GVY6
[Direct mapping] Very-long-chain 3-oxoacyl-CoA reductase
Show all
Metabolic proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
178 aa
19.5 kDa
No 0

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