MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.9 nTPM
HPA Brain:97.9 nTPM
GTEx:40.9 nTPM
FANTOM5:222.9 Scaled Tags Per Million
Pig:39.5 nTPM
Mouse:103.9 nTPM
Allen mouse:8.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 97.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.5
2411 Female, age 72, unknown 106.2
1870 Female, age 42, unknown 103.1
2019 Male, age 18, unknown 96.7
1830 Male, age 51, unknown 89.3
1833 Male, age 53, unknown 88.5
2828 Female, age 72, unknown 69.4
2586 Male, age 75, left hemisphere 65.9
2219 Male, age 76, both hemispheres 62.0
1827 Male, age 72, unknown 60.7
2666 Male, age 74, left hemisphere 53.0
Dorsal raphe nucleus
nTPM: 75.8
2750 Male, age 76, both hemispheres 102.2
1828 Male, age 53, unknown 74.6
2016 Female, age 72, unknown 70.0
2298 Female, age 72, unknown 66.4
2047 Male, age 72, unknown 65.5
Inferior colliculus
nTPM: 63.5
1848 Female, age 42, unknown 70.9
2097 Female, age 72, unknown 62.4
2849 Male, age 72, unknown 61.3
1890 Male, age 53, unknown 59.3
Median raphe nucleus
nTPM: 80.6
2220 Male, age 76, midline 80.6
Periaquaductal grey, anterior
nTPM: 61.0
2502 Female, age 75, unknown 65.6
1947 Male, age 18, unknown 64.0
1795 Male, age 51, unknown 53.5
Periaquaductal grey, dorsal
nTPM: 58.1
2464 Female, age 72, unknown 67.4
2850 Male, age 76, both hemispheres 61.6
1840 Male, age 53, unknown 53.9
1831 Male, age 72, unknown 49.4
Periaquaductal grey, lateral
nTPM: 61.4
2272 Male, age 74, both hemispheres 63.0
2140 Male, age 76, both hemispheres 62.8
2053 Male, age 18, unknown 58.4
Pretectal area
nTPM: 64.1
2316 Male, age 76, right hemisphere 74.4
2007 Male, age 72, unknown 72.4
1815 Male, age 53, unknown 71.4
1817 Female, age 42, unknown 70.2
2667 Female, age 75, unknown 70.2
2825 Male, age 18, unknown 64.6
2224 Female, age 72, unknown 62.3
2273 Male, age 74, both hemispheres 60.7
1944 Female, age 72, unknown 57.1
1816 Male, age 51, unknown 51.0
2407 Male, age 75, both hemispheres 50.3
Red nucleus
nTPM: 97.9
1821 Female, age 72, unknown 122.8
1865 Male, age 51, unknown 113.2
1904 Male, age 53, unknown 109.5
2227 Male, age 72, unknown 102.5
1954 Female, age 42, unknown 101.2
2769 Male, age 72, unknown 100.8
2823 Male, age 76, right hemisphere 100.8
2503 Female, age 72, unknown 99.9
2785 Male, age 18, unknown 94.7
2588 Male, age 74, left hemisphere 84.6
2725 Female, age 75, unknown 81.9
2584 Male, age 75, left hemisphere 63.2
Substantia nigra
nTPM: 80.5
2409 Female, age 72, unknown 101.9
2241 Male, age 72, unknown 91.4
1851 Male, age 51, unknown 91.2
1941 Male, age 53, unknown 86.2
2583 Male, age 75, right hemisphere 77.5
1916 Female, age 42, unknown 77.1
1889 Female, age 72, unknown 77.0
2590 Female, age 75, unknown 75.0
2699 Male, age 18, unknown 73.1
2665 Male, age 74, both hemispheres 54.1
Superior colliculus
nTPM: 67.5
1913 Female, age 42, unknown 91.4
1995 Male, age 72, unknown 79.7
1895 Male, age 76, right hemisphere 76.3
2587 Male, age 74, left hemisphere 73.8
1839 Male, age 51, unknown 70.5
2668 Female, age 75, unknown 69.4
1796 Male, age 53, unknown 59.2
2261 Male, age 18, unknown 57.5
2087 Female, age 72, unknown 55.1
2664 Male, age 75, both hemispheres 42.0
Ventral tegmental area
nTPM: 83.3
2410 Female, age 72, unknown 103.3
2223 Female, age 72, unknown 97.0
2218 Male, age 76, both hemispheres 84.2
1915 Female, age 42, unknown 78.6
1942 Male, age 51, unknown 70.1
2021 Male, age 53, unknown 66.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.9
Samples: 139

Max nTPM: 94.6
Min nTPM: 19.2
Std nTPM: 14.1
Median nTPM: 38.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 94.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 94.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 92.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 85.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 83.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 81.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 77.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 71.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 64.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 61.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 59.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 222.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 222.9
FF:10158-103A5 76 years, female 222.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.4
Samples: 4

Max nTPM: 35.2
Min nTPM: 20.8
Sample A Female 35.2
Sample B Female 20.8
Sample C Male 26.7
Sample D Male 27.0
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 58.1
Min nTPM: 19.6
Sample A Female 43.2
Sample B Female 24.3
Sample C Male 58.1
Sample D Male 19.6
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 21.1
Min nTPM: 16.7
Sample B Female 21.1
Sample C Male 18.5
Sample D Male 16.7
Superior colliculi
nTPM: 39.5
Samples: 4

Max nTPM: 73.2
Min nTPM: 24.7
Sample A Female 29.9
Sample B Female 24.7
Sample C Male 73.2
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 103.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 103.9
Samples: 4

Max nTPM: 120.1
Min nTPM: 88.4
Sample A Male 88.4
Sample B Male 102.6
Sample C Female 120.1
Sample D Female 104.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
68410285 Antisense, RP_041214_01_F02, Mouse strain C57BL/6J (56 days, male) 9.2
71015195 Antisense, RP_050725_02_G02, Mouse strain C57BL/6J (56 days, male) 7.1

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