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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:983.4 nTPM
HPA Brain:206.7 nTPM
GTEx:983.4 nTPM
FANTOM5:524.4 Scaled Tags Per Million
Pig:342.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 174.2
1981 Female, age 72, midline 201.0
2816 Male, age 47, midline 184.5
2048 Male, age 55, midline 175.7
2565 Male, age 75, midline 156.4
2194 Female, age 79, both hemispheres 153.4
Cervical spinal cord, dorsal horn
nTPM: 183.9
2296 Male, age 66, both hemispheres 290.6
2173 Female, age 72, unknown 271.2
2069 Male, age 47, both hemispheres 178.0
1877 Male, age 55, unknown 153.7
2297 Male, age 75, both hemispheres 105.1
2721 Male, age 90, both hemispheres 104.8
Cervical spinal cord, ventral horn
nTPM: 206.7
2098 Female, age 72, unknown 239.9
2480 Male, age 75, both hemispheres 237.3
2809 Male, age 90, both hemispheres 209.0
2295 Male, age 66, both hemispheres 203.6
2820 Female, age 79, both hemispheres 178.9
2068 Male, age 55, unknown 171.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

983.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 983.4
Samples: 159

Max nTPM: 1790.9
Min nTPM: 307.6
Std nTPM: 304.8
Median nTPM: 984.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1790.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1636.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1609.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1579.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1517.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1497.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1467.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1462.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1442.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1442.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1440.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1439.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1420.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1419.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1418.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1417.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1408.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1401.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1384.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1358.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1354.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1345.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1343.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1325.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1318.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1295.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1284.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1274.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1271.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1265.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1264.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1258.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1250.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1219.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1218.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1212.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1208.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1207.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1207.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1205.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1204.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1202.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1192.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1190.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1180.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1176.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1165.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1162.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1158.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1156.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1135.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1133.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1130.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1123.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1120.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1116.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1099.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1089.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1087.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1073.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1066.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1063.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1063.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1062.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1062.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1050.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1048.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1043.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1041.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1024.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1023.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1022.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1017.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1014.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1013.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1012.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1004.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 998.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 995.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 984.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 980.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 978.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 978.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 977.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 967.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 964.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 964.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 951.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 941.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 940.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 918.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 916.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 914.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 913.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 909.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 908.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 902.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 896.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 878.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 877.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 874.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 870.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 868.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 867.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 866.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 866.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 859.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 855.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 846.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 841.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 819.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 815.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 812.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 810.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 810.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 809.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 792.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 787.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 783.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 772.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 770.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 769.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 741.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 740.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 739.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 719.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 705.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 693.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 669.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 668.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 663.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 658.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 638.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 632.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 631.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 626.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 615.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 606.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 603.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 603.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 593.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 589.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 583.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 573.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 555.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 552.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 522.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 506.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 505.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 487.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 465.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 446.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 431.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 429.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 421.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 414.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 394.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 377.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 307.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

524.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 524.4
FF:10181-103D1 60 years, female 660.7
FF:10159-103A6 76 years, female 388.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

342.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 277.6
Samples: 4

Max nTPM: 291.0
Min nTPM: 257.8
Sample A Female 285.9
Sample B Female 275.6
Sample C Male 257.8
Sample D Male 291.0
Ventral spinal cord
nTPM: 342.6
Samples: 4

Max nTPM: 413.2
Min nTPM: 296.2
Sample A Female 319.3
Sample B Female 341.6
Sample C Male 296.2
Sample D Male 413.2

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