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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:116.9 nTPM
GTEx:116.9 nTPM
FANTOM5:58.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA060740
Squamous epithelial cells Low


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 116.9
Samples: 156

Max nTPM: 457.2
Min nTPM: 7.0
Std nTPM: 84.0
Median nTPM: 115.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 457.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 353.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 343.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 308.8
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 295.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 261.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 253.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 252.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 250.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 241.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 241.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 241.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 226.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 226.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 225.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 224.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 221.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 220.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 213.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 213.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 210.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 210.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 205.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 204.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 201.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 199.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 197.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 197.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 195.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 194.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 188.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 187.9
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 187.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 185.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 185.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 184.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 182.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 181.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 180.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 179.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 174.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 172.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 170.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 168.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 166.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 165.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 165.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 158.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 156.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 149.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 146.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 146.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 143.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 143.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 143.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 142.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 141.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 141.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 140.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 140.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 139.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 138.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 138.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 138.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 137.6
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 137.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 130.5
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 127.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 126.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 124.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 123.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 122.3
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 120.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 120.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 117.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 117.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 116.5
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 116.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 115.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 115.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 107.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 107.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 104.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 101.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 100.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 99.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 89.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 88.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 88.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 87.2
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 86.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 85.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 84.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 79.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 77.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 76.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 75.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 72.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 71.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 70.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 70.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 67.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 65.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 62.5
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 58.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 58.8
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 57.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 55.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 52.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 51.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 48.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 47.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 47.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 46.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 44.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 44.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 42.2
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 41.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 40.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 39.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 36.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 36.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 36.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 32.5
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 31.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 29.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 27.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 24.7
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 24.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 23.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 22.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 22.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 21.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 21.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 21.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 21.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 19.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 18.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 18.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 18.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 17.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 17.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 16.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 15.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 13.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 13.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 13.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 12.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 12.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 12.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 11.9
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 11.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 9.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 8.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 7.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 7.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 58.1
FF:10204-103F6 68 years, female 58.1

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