MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:29.5 nTPM
GTEx:12.3 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:27.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.8
2019 Male, age 18, unknown 39.3
2219 Male, age 76, both hemispheres 31.8
2411 Female, age 72, unknown 29.7
1830 Male, age 51, unknown 28.6
2586 Male, age 75, left hemisphere 25.7
2666 Male, age 74, left hemisphere 25.6
1827 Male, age 72, unknown 25.1
1833 Male, age 53, unknown 25.0
1870 Female, age 42, unknown 24.9
2828 Female, age 72, unknown 22.7
Dorsal raphe nucleus
nTPM: 26.1
2047 Male, age 72, unknown 29.0
2750 Male, age 76, both hemispheres 28.4
1828 Male, age 53, unknown 28.1
2016 Female, age 72, unknown 23.0
2298 Female, age 72, unknown 22.0
Inferior colliculus
nTPM: 29.5
2097 Female, age 72, unknown 31.7
1890 Male, age 53, unknown 29.9
2849 Male, age 72, unknown 28.7
1848 Female, age 42, unknown 27.5
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Periaquaductal grey, anterior
nTPM: 22.1
2502 Female, age 75, unknown 24.1
1795 Male, age 51, unknown 21.3
1947 Male, age 18, unknown 20.9
Periaquaductal grey, dorsal
nTPM: 21.9
2464 Female, age 72, unknown 27.8
1840 Male, age 53, unknown 20.4
1831 Male, age 72, unknown 20.0
2850 Male, age 76, both hemispheres 19.6
Periaquaductal grey, lateral
nTPM: 21.5
2272 Male, age 74, both hemispheres 22.9
2140 Male, age 76, both hemispheres 20.9
2053 Male, age 18, unknown 20.7
Pretectal area
nTPM: 25.8
2007 Male, age 72, unknown 32.2
2407 Male, age 75, both hemispheres 28.1
1817 Female, age 42, unknown 27.1
1816 Male, age 51, unknown 26.5
2316 Male, age 76, right hemisphere 26.4
2667 Female, age 75, unknown 25.9
1944 Female, age 72, unknown 25.8
2273 Male, age 74, both hemispheres 23.9
1815 Male, age 53, unknown 23.5
2825 Male, age 18, unknown 22.9
2224 Female, age 72, unknown 21.7
Red nucleus
nTPM: 27.5
2785 Male, age 18, unknown 31.3
2823 Male, age 76, right hemisphere 30.3
2588 Male, age 74, left hemisphere 29.5
2584 Male, age 75, left hemisphere 28.9
2769 Male, age 72, unknown 28.9
2725 Female, age 75, unknown 27.8
1865 Male, age 51, unknown 26.2
2227 Male, age 72, unknown 26.0
2503 Female, age 72, unknown 25.6
1821 Female, age 72, unknown 25.2
1904 Male, age 53, unknown 25.1
1954 Female, age 42, unknown 25.0
Substantia nigra
nTPM: 22.6
1941 Male, age 53, unknown 30.0
1889 Female, age 72, unknown 27.7
2583 Male, age 75, right hemisphere 25.0
2241 Male, age 72, unknown 23.8
1916 Female, age 42, unknown 22.5
1851 Male, age 51, unknown 21.7
2665 Male, age 74, both hemispheres 20.8
2699 Male, age 18, unknown 20.6
2590 Female, age 75, unknown 19.1
2409 Female, age 72, unknown 14.4
Superior colliculus
nTPM: 24.0
1895 Male, age 76, right hemisphere 30.7
1839 Male, age 51, unknown 26.9
1796 Male, age 53, unknown 25.5
2664 Male, age 75, both hemispheres 24.5
2668 Female, age 75, unknown 24.5
2087 Female, age 72, unknown 24.3
2587 Male, age 74, left hemisphere 23.6
1913 Female, age 42, unknown 21.4
1995 Male, age 72, unknown 19.1
2261 Male, age 18, unknown 19.1
Ventral tegmental area
nTPM: 23.2
2218 Male, age 76, both hemispheres 26.3
2223 Female, age 72, unknown 25.9
2410 Female, age 72, unknown 25.5
1942 Male, age 51, unknown 20.9
1915 Female, age 42, unknown 20.1
2021 Male, age 53, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 139

Max nTPM: 32.4
Min nTPM: 4.3
Std nTPM: 3.9
Median nTPM: 11.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 32.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 21.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 21.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 20.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 18.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 17.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 17.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 17.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 17.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.0
Samples: 4

Max nTPM: 15.5
Min nTPM: 9.3
Sample A Female 9.3
Sample B Female 13.6
Sample C Male 13.4
Sample D Male 15.5
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 15.0
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 14.2
Sample C Male 15.0
Sample D Male 13.6
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 13.2
Min nTPM: 13.1
Sample B Female 13.2
Sample C Male 13.1
Sample D Male 13.2
Superior colliculi
nTPM: 11.7
Samples: 4

Max nTPM: 14.5
Min nTPM: 9.0
Sample A Female 9.0
Sample B Female 10.9
Sample C Male 14.5
Sample D Male 12.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.0
Samples: 4

Max nTPM: 28.4
Min nTPM: 25.8
Sample A Male 25.8
Sample B Male 26.6
Sample C Female 28.4
Sample D Female 27.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org