We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SAP18
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SAP18
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:296.5 nTPM
HPA Brain:172.9 nTPM
GTEx:296.5 nTPM
FANTOM5:372.9 Scaled Tags Per Million
Pig:49.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 146.6
1981 Female, age 72, midline 170.7
2565 Male, age 75, midline 165.0
2048 Male, age 55, midline 139.7
2194 Female, age 79, both hemispheres 135.4
2816 Male, age 47, midline 122.5
Cervical spinal cord, dorsal horn
nTPM: 138.5
2296 Male, age 66, both hemispheres 185.0
2173 Female, age 72, unknown 178.0
2069 Male, age 47, both hemispheres 143.0
1877 Male, age 55, unknown 125.8
2297 Male, age 75, both hemispheres 108.8
2721 Male, age 90, both hemispheres 90.1
Cervical spinal cord, ventral horn
nTPM: 172.9
2480 Male, age 75, both hemispheres 252.8
2809 Male, age 90, both hemispheres 199.3
2295 Male, age 66, both hemispheres 170.6
2098 Female, age 72, unknown 165.2
2068 Male, age 55, unknown 128.3
2820 Female, age 79, both hemispheres 121.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 296.5
Samples: 159

Max nTPM: 732.2
Min nTPM: 115.0
Std nTPM: 104.4
Median nTPM: 297.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 732.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 636.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 620.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 600.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 558.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 511.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 501.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 486.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 464.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 456.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 448.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 418.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 417.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 411.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 407.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 406.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 406.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 404.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 403.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 402.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 400.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 398.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 397.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 396.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 392.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 387.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 384.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 383.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 382.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 381.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 381.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 374.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 372.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 369.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 364.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 362.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 361.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 360.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 360.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 360.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 358.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 358.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 351.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 348.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 346.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 342.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 334.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 334.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 332.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 325.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 324.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 323.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 322.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 321.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 319.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 318.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 316.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 315.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 315.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 314.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 312.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 308.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 308.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 308.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 308.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 307.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 307.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 306.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 305.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 305.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 305.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 304.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 303.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 301.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 299.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 299.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 299.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 298.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 297.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 297.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 294.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 293.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 292.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 288.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 288.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 288.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 285.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 283.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 283.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 281.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 278.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 277.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 273.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 273.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 271.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 268.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 267.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 260.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 257.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 256.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 253.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 253.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 252.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 247.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 247.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 247.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 245.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 242.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 239.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 238.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 237.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 237.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 237.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 234.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 233.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 232.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 231.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 229.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 223.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 221.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 220.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 216.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 210.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 203.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 201.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 201.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 200.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 198.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 198.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 195.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 194.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 193.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 191.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 190.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 189.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 185.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 182.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 179.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 178.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 176.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 175.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 175.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 171.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 170.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 169.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 168.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 167.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 161.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 158.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 157.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 157.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 154.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 147.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 144.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 139.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 137.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 124.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 115.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 115.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

372.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 372.9
FF:10181-103D1 60 years, female 429.9
FF:10159-103A6 76 years, female 315.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 42.2
Samples: 4

Max nTPM: 46.3
Min nTPM: 40.4
Sample A Female 40.4
Sample B Female 40.8
Sample C Male 46.3
Sample D Male 41.2
Ventral spinal cord
nTPM: 49.0
Samples: 4

Max nTPM: 52.1
Min nTPM: 44.7
Sample A Female 44.7
Sample B Female 51.7
Sample C Male 52.1
Sample D Male 47.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org