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LYPD1
HPA
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  • LYPD1
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

LYPD1
Synonyms LYPDC1, MGC29643
Gene descriptioni

Full gene name according to HGNC.

LY6/PLAUR domain containing 1
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband q21.2
Chromosome location (bp) 132643286 - 132671579
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000150551 (version 109)
Entrez gene 116372
HGNC HGNC:28431
UniProt Q8N2G4 (UniProt - Evidence at protein level)
neXtProt NX_Q8N2G4
GeneCards LYPD1
Antibodypedia LYPD1 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Believed to act as a modulator of nicotinic acetylcholine receptors (nAChRs) activity. In vitro increases receptor desensitization and decreases affinity for ACh of alpha-4:beta-2-containing nAChRs. May play a role in the intracellular trafficking of alpha-4:beta-2 and alpha-7-containing nAChRs and may inhibit their expression at the cell surface. May be involved in the control of anxiety.... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable acetylcholine receptor binding activity and acetylcholine receptor inhibitor activity. Predicted to be involved in acetylcholine receptor signaling pathway. Predicted to act upstream of or within several processes, including behavioral fear response; cholinergic synaptic transmission; and negative regulation of protein localization to plasma membrane. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
LYPD1-201
ENSP00000340563
ENST00000345008
Q8N2G4
[Direct mapping] Ly6/PLAUR domain-containing protein 1
Show all
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0005576 [extracellular region]
GO:0005886 [plasma membrane]
GO:0016020 [membrane]
GO:0030550 [acetylcholine receptor inhibitor activity]
GO:0045202 [synapse]
GO:0095500 [acetylcholine receptor signaling pathway]
GO:2000272 [negative regulation of signaling receptor activity]
Show all
89 aa
9.4 kDa
No 0
LYPD1-202
ENSP00000380605
ENST00000397463
Q8N2G4
[Direct mapping] Ly6/PLAUR domain-containing protein 1
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   TMHMM predicted membrane proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
   DeepTMHMM predicted secreted proteins
   DeepSig predicted secreted proteins
Predicted intracellular proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0001662 [behavioral fear response]
GO:0005576 [extracellular region]
GO:0005886 [plasma membrane]
GO:0007271 [synaptic transmission, cholinergic]
GO:0016020 [membrane]
GO:0030550 [acetylcholine receptor inhibitor activity]
GO:0033130 [acetylcholine receptor binding]
GO:0035094 [response to nicotine]
GO:0045202 [synapse]
GO:0072659 [protein localization to plasma membrane]
GO:0095500 [acetylcholine receptor signaling pathway]
GO:1903077 [negative regulation of protein localization to plasma membrane]
GO:2000272 [negative regulation of signaling receptor activity]
Show all
141 aa
15.2 kDa
Yes 0

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