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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:513.0 nTPM
HPA Brain:516.4 nTPM
GTEx:513.0 nTPM
FANTOM5:953.3 Scaled Tags Per Million
Pig:670.2 nTPM
Mouse:1173.9 nTPM
Allen mouse:22.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

516.4
Sample id Sample description nTPM
Amygdala
nTPM: 440.5
2514 Male, age 75, right hemisphere 698.1
2517 Female, age 94, left hemisphere 503.0
1987 Female, age 91, left hemisphere 491.8
2814 Male, age 76, right hemisphere 257.6
2695 Female, age 67, right hemisphere 251.8
Basal amygdala
nTPM: 462.7
2609 Male, age 75, right hemisphere 609.7
2243 Female, age 91, right hemisphere 564.0
2110 Male, age 80, left hemisphere 531.6
2685 Female, age 94, left hemisphere 505.3
1955 Male, age 76, both hemispheres 364.2
2827 Female, age 67, right hemisphere 201.4
Central amygdala
nTPM: 389.2
2239 Male, age 80, left hemisphere 480.6
2515 Male, age 75, right hemisphere 439.5
2826 Female, age 94, left hemisphere 412.4
2701 Female, age 91, right hemisphere 358.8
1905 Male, age 76, both hemispheres 254.9
Corticomedial amygdala
nTPM: 516.4
2829 Male, age 80, left hemisphere 669.8
2428 Male, age 75, right hemisphere 595.0
2429 Female, age 94, left hemisphere 584.2
2242 Female, age 91, right hemisphere 579.9
2240 Male, age 76, both hemispheres 392.0
2535 Female, age 67, right hemisphere 277.6
Lateral amygdala
nTPM: 378.7
2516 Male, age 75, right hemisphere 557.1
2534 Female, age 94, left hemisphere 475.3
2256 Male, age 80, left hemisphere 379.2
2255 Female, age 91, right hemisphere 373.7
1883 Male, age 76, both hemispheres 338.4
2830 Female, age 67, right hemisphere 148.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

513.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 513.0
Samples: 152

Max nTPM: 1079.3
Min nTPM: 20.2
Std nTPM: 174.8
Median nTPM: 509.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1079.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 923.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 886.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 872.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 857.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 846.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 840.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 832.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 829.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 814.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 785.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 756.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 737.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 736.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 729.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 719.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 715.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 701.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 693.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 690.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 684.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 683.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 682.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 680.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 675.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 673.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 673.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 666.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 662.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 662.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 660.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 655.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 653.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 644.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 640.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 632.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 630.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 629.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 624.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 613.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 609.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 607.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 604.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 594.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 594.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 587.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 584.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 582.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 582.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 580.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 579.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 573.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 570.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 570.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 568.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 566.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 564.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 564.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 560.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 560.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 559.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 555.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 555.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 553.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 552.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 545.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 545.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 542.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 535.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 533.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 529.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 524.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 522.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 516.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 513.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 510.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 508.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 508.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 507.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 505.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 501.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 497.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 495.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 494.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 493.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 493.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 491.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 485.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 482.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 480.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 479.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 472.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 464.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 454.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 449.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 449.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 446.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 439.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 438.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 437.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 435.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 431.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 428.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 421.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 421.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 420.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 415.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 414.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 413.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 412.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 407.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 406.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 405.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 404.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 398.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 392.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 389.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 388.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 386.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 383.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 381.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 368.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 364.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 363.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 363.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 358.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 356.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 348.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 347.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 343.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 333.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 329.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 329.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 311.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 310.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 309.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 304.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 295.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 295.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 280.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 266.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 261.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 236.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 232.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 230.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 213.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 213.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 212.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 200.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 93.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 58.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 20.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

953.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 953.3
FF:10151-102I7 76 years, female 953.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

670.2
Pig sample Sample description nTPM
Amygdala
nTPM: 670.3
Samples: 4

Max nTPM: 819.4
Min nTPM: 574.3
Sample A Female 819.4
Sample B Female 639.8
Sample C Male 574.3
Sample D Male 647.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1173.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 1173.9
Samples: 4

Max nTPM: 1222.4
Min nTPM: 1111.2
Sample A Male 1186.9
Sample B Male 1175.0
Sample C Female 1111.2
Sample D Female 1222.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.7
68080704 Antisense, RP_040929_01_G03, Mouse strain C57BL/6J (56 days, male) 22.7

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