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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

72.629
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:117.1 nTPM
FANTOM5:384.7 Scaled Tags Per Million
Pig:92.4 nTPM
Mouse:53.1 nTPM
Allen mouse:1.2 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA021307
Thalamus mean intensity 72.629
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Medial geniculate nucleus 1.882
Parafascicular thalamic nucleus 4.541
Pregeniculate nucleus 11.244
Stria terminalis 72.629
Zona incerta 4.734
Anterodorsal thalamic nucleus 4.415
Reticular thalamic nucleus 0.345
Vental anterior thalamic nucleus -
Medial habenular nucleus 7.375
Laterodorsal thalamic area 8.155
Paraventricular thalamic nucleus 2.845
Central medial thalamic area 2.111
Ventral lateral thalamic area -
Ventral medial thalamic area 6.617
Lateral habenulal nucleus 4.604
Ventral posterior thalamus 2.362
Anterior pretactal nucleus 16.484
Retromammillary nucleus 24.291

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.1
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 80.5
2032 Female, age 42, unknown 93.0
2497 Male, age 66, unknown 92.1
2396 Male, age 61, right hemisphere 56.4
Centromedial thalamic nucleus
nTPM: 100.4
2279 Female, age 85, left hemisphere 119.5
2401 Male, age 76, right hemisphere 81.2
Habenula
nTPM: 64.0
2203 Male, age 61, left hemisphere 82.1
1957 Male, age 80, both hemispheres 67.1
2252 Male, age 62, unknown 61.4
2276 Male, age 66, unknown 45.4
Lateral geniculate body
nTPM: 96.7
2575 Female, age 94, right hemisphere 145.7
2106 Female, age 67, right hemisphere 107.7
2841 Male, age 80, both hemispheres 104.7
1953 Male, age 62, unknown 93.9
2659 Male, age 66, unknown 90.0
2035 Female, age 72, unknown 82.9
2399 Male, age 61, left hemisphere 76.3
2857 Male, age 74, right hemisphere 72.2
Lateral thalamic nuclei
nTPM: 97.6
2765 Female, age 67, both hemispheres 151.4
2573 Female, age 94, left hemisphere 100.5
2661 Female, age 72, unknown 95.7
2577 Male, age 74, both hemispheres 73.6
1903 Male, age 76, left hemisphere 66.4
Medial dorsal thalamic nucleus
nTPM: 73.4
2660 Female, age 72, unknown 111.1
2402 Female, age 67, both hemispheres 104.2
1859 Male, age 76, both hemispheres 86.0
2283 Male, age 80, right hemisphere 81.0
1810 Male, age 48, unknown 77.0
2576 Male, age 74, both hemispheres 75.7
1930 Female, age 42, unknown 72.6
2026 Male, age 62, unknown 66.1
2492 Male, age 75, right hemisphere 64.8
1971 Male, age 61, right hemisphere 64.4
2039 Female, age 72, unknown 63.6
2498 Male, age 66, unknown 59.5
2572 Female, age 94, right hemisphere 29.0
Medial geniculate body
nTPM: 87.7
2217 Female, age 72, unknown 98.0
2571 Male, age 75, right hemisphere 96.4
2657 Male, age 74, right hemisphere 96.0
2049 Male, age 76, both hemispheres 94.5
2207 Male, age 80, right hemisphere 85.2
1811 Female, age 42, unknown 82.7
2650 Female, age 94, left hemisphere 60.8
Nucleus reuniens
nTPM: 105.3
2210 Female, age 85, left hemisphere 136.0
2205 Male, age 80, left hemisphere 95.1
2212 Female, age 67, left hemisphere 84.7
Nucleus rhomboideus
nTPM: 84.5
2280 Female, age 85, left hemisphere 115.5
2213 Female, age 67, left hemisphere 77.7
2206 Male, age 80, both hemispheres 60.3
Posterior thalamic nucleus
nTPM: 67.6
2495 Female, age 67, right hemisphere 105.1
2266 Male, age 76, right hemisphere 67.1
2655 Male, age 74, right hemisphere 64.4
2649 Female, age 94, both hemispheres 33.9
Pulvinar
nTPM: 88.6
2496 Female, age 67, right hemisphere 113.7
2724 Male, age 74, right hemisphere 96.9
2582 Female, age 72, unknown 92.3
1929 Male, age 48, unknown 90.9
2398 Male, age 61, left hemisphere 88.2
1972 Male, age 62, unknown 88.1
2214 Male, age 76, right hemisphere 86.9
1899 Female, age 42, unknown 82.4
2499 Male, age 66, unknown 80.2
1932 Male, age 80, right hemisphere 66.2
Subthalamic nucleus
nTPM: 117.1
2124 Male, age 62, unknown 149.8
2282 Male, age 61, both hemispheres 130.1
2056 Female, age 72, unknown 126.8
2275 Male, age 66, unknown 117.5
2779 Female, age 42, unknown 112.9
2216 Male, age 48, unknown 111.8
2658 Male, age 74, both hemispheres 108.0
2406 Female, age 72, unknown 79.6
Ventral posterolateral thalamic nucleus
nTPM: 86.8
2570 Male, age 75, right hemisphere 116.0
2581 Female, age 72, unknown 95.6
2578 Male, age 74, both hemispheres 89.9
2740 Male, age 76, right hemisphere 81.4
2197 Male, age 80, both hemispheres 69.5
2397 Male, age 61, right hemisphere 68.3
Ventral posteromedial thalamic nucleus
nTPM: 86.3
2281 Male, age 75, right hemisphere 111.5
2127 Male, age 76, right hemisphere 89.3
2202 Male, age 61, left hemisphere 84.4
2653 Male, age 74, both hemispheres 74.3
2758 Male, age 80, both hemispheres 72.1
Ventral thalamic nuclei
nTPM: 93.4
2652 Male, age 74, left hemisphere 117.9
2291 Female, age 72, unknown 105.7
2580 Male, age 66, unknown 101.4
2858 Female, age 72, unknown 101.0
2285 Male, age 62, unknown 96.5
1845 Male, age 48, unknown 84.2
1912 Female, age 42, unknown 84.1
1860 Male, age 76, both hemispheres 78.9
2204 Male, age 80, both hemispheres 70.9
Zona incerta
nTPM: 114.8
2215 Male, age 66, unknown 150.9
2822 Male, age 74, right hemisphere 122.5
2403 Male, age 62, unknown 117.6
2663 Female, age 72, unknown 104.4
2208 Male, age 80, right hemisphere 78.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

384.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 384.7
FF:10154-103A1 76 years, female 384.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.4
Pig sample Sample description nTPM
Thalamus
nTPM: 92.4
Samples: 4

Max nTPM: 130.1
Min nTPM: 58.2
Sample A Female 58.2
Sample B Female 115.3
Sample C Male 65.9
Sample D Male 130.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 53.1
Samples: 4

Max nTPM: 61.3
Min nTPM: 48.8
Sample A Male 48.9
Sample B Male 48.8
Sample C Female 61.3
Sample D Female 53.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.2
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 1.2
70238884 Antisense, RP_050526_04_C08, Mouse strain C57BL/6J (56 days, male) 1.2
73817444 Antisense, RP_051101_01_B08, Mouse strain C57BL/6J (56 days, male) 1.2

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