HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:28.7 nTPM
HPA Brain:53.3 nTPM
GTEx:28.7 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:23.3 nTPM
Mouse:10.6 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048692Antibody CAB004378
Glial cells Not detectedLow
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 53.3
Sample id Sample description nTPM
Hippocampus
nTPM: 44.3
2529 Female, age 94, left hemisphere 57.5
1911 Female, age 85, right hemisphere 47.7
2148 Female, age 91, left hemisphere 44.8
2621 Female, age 67, right hemisphere 44.1
1898 Male, age 80, left hemisphere 39.8
1855 Male, age 76, left hemisphere 32.0
Dentate gyrus
nTPM: 41.5
2530 Female, age 94, left hemisphere 56.6
2246 Female, age 85, both hemispheres 41.9
2528 Male, age 74, both hemispheres 40.4
2531 Female, age 67, both hemispheres 40.4
2010 Male, age 76, both hemispheres 39.7
1927 Female, age 91, both hemispheres 29.8
Entorhinal gyrus
nTPM: 46.9
2117 Female, age 91, right hemisphere 66.3
2686 Male, age 75, right hemisphere 60.9
2764 Male, age 80, right hemisphere 44.0
1938 Female, age 85, left hemisphere 40.3
2613 Female, age 94, left hemisphere 40.0
1787 Male, age 76, left hemisphere 30.0
Hippocampus, CA1
nTPM: 35.3
2527 Male, age 74, both hemispheres 46.7
2082 Female, age 91, right hemisphere 42.6
1873 Female, age 85, both hemispheres 40.5
2749 Male, age 80, left hemisphere 28.4
2045 Male, age 76, both hemispheres 18.3
Hippocampus, CA2
nTPM: 43.1
1963 Male, age 80, left hemisphere 56.3
2113 Female, age 91, right hemisphere 47.8
2437 Female, age 94, left hemisphere 45.5
1940 Female, age 85, left hemisphere 44.9
2249 Male, age 74, both hemispheres 41.1
1892 Male, age 76, both hemispheres 23.3
Hippocampus, CA3
nTPM: 36.3
1891 Female, age 85, both hemispheres 55.1
2861 Female, age 67, both hemispheres 39.3
2436 Male, age 74, both hemispheres 34.4
1867 Male, age 76, both hemispheres 33.4
2137 Male, age 80, left hemisphere 28.6
2620 Female, age 94, left hemisphere 26.7
Parahippocampal cortex
nTPM: 40.6
2692 Male, age 74, both hemispheres 58.8
1990 Female, age 91, right hemisphere 43.7
2532 Female, age 72, left hemisphere 43.0
2622 Female, age 67, right hemisphere 42.5
1933 Female, age 85, both hemispheres 40.1
2245 Female, age 91, both hemispheres 37.9
1850 Male, age 80, both hemispheres 37.5
2018 Male, age 76, both hemispheres 36.8
2250 Female, age 67, right hemisphere 32.7
2693 Female, age 94, both hemispheres 32.5
Perirhinal gyrus
nTPM: 27.8
1847 Female, age 91, left hemisphere 30.7
2521 Female, age 94, right hemisphere 29.2
1841 Female, age 85, right hemisphere 28.3
1794 Male, age 80, right hemisphere 27.8
2848 Male, age 76, right hemisphere 23.1
Subiculum
nTPM: 53.3
2042 Male, age 76, both hemispheres 61.0
2438 Female, age 94, left hemisphere 58.8
1901 Male, age 80, both hemispheres 54.2
2619 Male, age 74, both hemispheres 50.5
2729 Female, age 91, right hemisphere 48.3
1977 Female, age 85, both hemispheres 46.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 28.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.7
Samples: 197

Max nTPM: 59.1
Min nTPM: 10.0
Std nTPM: 10.8
Median nTPM: 27.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 59.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 58.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 54.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 54.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 53.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 53.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 53.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 53.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 52.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 49.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 48.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 84.2
FF:10153-102I9 76 years, female 106.1
FF:10169-103B7 60 years, female 62.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 23.3
Pig sample Sample description nTPM
Subiculum
nTPM: 20.0
Samples: 4

Max nTPM: 23.4
Min nTPM: 18.2
Sample A Female 23.4
Sample B Female 19.2
Sample C Male 19.0
Sample D Male 18.2
Dorsal hippocampus
nTPM: 22.4
Samples: 4

Max nTPM: 27.3
Min nTPM: 16.1
Sample A Female 27.3
Sample B Female 19.5
Sample C Male 26.6
Sample D Male 16.1
Entorhinal cortex
nTPM: 23.4
Samples: 4

Max nTPM: 26.4
Min nTPM: 20.4
Sample A Female 22.7
Sample B Female 26.4
Sample C Male 23.9
Sample D Male 20.4
Ventral hippocampus
nTPM: 22.3
Samples: 4

Max nTPM: 26.4
Min nTPM: 17.9
Sample A Female 18.6
Sample B Female 17.9
Sample C Male 26.2
Sample D Male 26.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 10.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.6
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.6
Sample A Male 11.7
Sample B Male 11.0
Sample C Female 9.6
Sample D Female 9.9
Hippocampal formation
nTPM: 10.2
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.7
Sample A Male 10.1
Sample B Male 10.1
Sample C Female 9.7
Sample D Female 10.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
100144855 Antisense, RP_110519_02_A12, Mouse strain C57BL/6J (56 days, male) 1.9

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