MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.5 nTPM
HPA Brain:62.9 nTPM
GTEx:43.5 nTPM
FANTOM5:183.5 Scaled Tags Per Million
Pig:70.3 nTPM
Mouse:27.8 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.8
1830 Male, age 51, unknown 69.2
1870 Female, age 42, unknown 68.1
2019 Male, age 18, unknown 68.0
2411 Female, age 72, unknown 61.1
1833 Male, age 53, unknown 59.0
2828 Female, age 72, unknown 45.7
2666 Male, age 74, left hemisphere 44.6
1827 Male, age 72, unknown 39.8
2586 Male, age 75, left hemisphere 30.1
2219 Male, age 76, both hemispheres 22.0
Dorsal raphe nucleus
nTPM: 40.2
2750 Male, age 76, both hemispheres 52.4
1828 Male, age 53, unknown 40.2
2016 Female, age 72, unknown 39.8
2298 Female, age 72, unknown 39.0
2047 Male, age 72, unknown 29.7
Inferior colliculus
nTPM: 39.5
1848 Female, age 42, unknown 42.5
1890 Male, age 53, unknown 40.1
2097 Female, age 72, unknown 38.6
2849 Male, age 72, unknown 37.0
Median raphe nucleus
nTPM: 43.0
2220 Male, age 76, midline 43.0
Periaquaductal grey, anterior
nTPM: 34.1
1947 Male, age 18, unknown 36.8
2502 Female, age 75, unknown 35.6
1795 Male, age 51, unknown 30.0
Periaquaductal grey, dorsal
nTPM: 36.1
2850 Male, age 76, both hemispheres 43.7
2464 Female, age 72, unknown 39.1
1831 Male, age 72, unknown 38.5
1840 Male, age 53, unknown 23.2
Periaquaductal grey, lateral
nTPM: 46.9
2272 Male, age 74, both hemispheres 50.8
2140 Male, age 76, both hemispheres 50.5
2053 Male, age 18, unknown 39.5
Pretectal area
nTPM: 42.0
2407 Male, age 75, both hemispheres 54.0
2316 Male, age 76, right hemisphere 53.2
1815 Male, age 53, unknown 47.9
2273 Male, age 74, both hemispheres 47.2
2007 Male, age 72, unknown 44.2
1817 Female, age 42, unknown 42.9
2825 Male, age 18, unknown 41.5
2224 Female, age 72, unknown 40.7
1944 Female, age 72, unknown 31.2
2667 Female, age 75, unknown 30.7
1816 Male, age 51, unknown 28.9
Red nucleus
nTPM: 62.9
1865 Male, age 51, unknown 78.2
1904 Male, age 53, unknown 76.4
2785 Male, age 18, unknown 74.7
1821 Female, age 72, unknown 69.7
2769 Male, age 72, unknown 68.5
2227 Male, age 72, unknown 68.2
1954 Female, age 42, unknown 65.6
2503 Female, age 72, unknown 58.2
2725 Female, age 75, unknown 52.2
2823 Male, age 76, right hemisphere 49.5
2584 Male, age 75, left hemisphere 48.7
2588 Male, age 74, left hemisphere 44.3
Substantia nigra
nTPM: 43.8
2590 Female, age 75, unknown 69.9
2583 Male, age 75, right hemisphere 63.7
2409 Female, age 72, unknown 45.3
1889 Female, age 72, unknown 43.3
1851 Male, age 51, unknown 42.6
2665 Male, age 74, both hemispheres 37.7
2241 Male, age 72, unknown 36.6
1941 Male, age 53, unknown 35.3
2699 Male, age 18, unknown 33.7
1916 Female, age 42, unknown 30.3
Superior colliculus
nTPM: 46.9
1913 Female, age 42, unknown 71.0
1995 Male, age 72, unknown 62.4
2587 Male, age 74, left hemisphere 61.6
1839 Male, age 51, unknown 49.7
1796 Male, age 53, unknown 41.9
2668 Female, age 75, unknown 41.7
2664 Male, age 75, both hemispheres 37.4
2261 Male, age 18, unknown 35.8
2087 Female, age 72, unknown 34.0
1895 Male, age 76, right hemisphere 33.8
Ventral tegmental area
nTPM: 50.1
2223 Female, age 72, unknown 68.4
2021 Male, age 53, unknown 52.5
2218 Male, age 76, both hemispheres 51.4
2410 Female, age 72, unknown 49.5
1915 Female, age 42, unknown 39.4
1942 Male, age 51, unknown 39.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.5
Samples: 139

Max nTPM: 137.8
Min nTPM: 11.3
Std nTPM: 22.4
Median nTPM: 38.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 137.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 126.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 111.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 106.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 101.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 98.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 88.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 82.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 79.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 78.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 183.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 183.5
FF:10158-103A5 76 years, female 183.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 70.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.4
Samples: 4

Max nTPM: 80.0
Min nTPM: 33.3
Sample A Female 48.8
Sample B Female 33.3
Sample C Male 39.5
Sample D Male 80.0
Midbrain
nTPM: 70.3
Samples: 4

Max nTPM: 173.8
Min nTPM: 30.9
Sample A Female 173.8
Sample B Female 41.9
Sample C Male 34.6
Sample D Male 30.9
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 34.2
Min nTPM: 22.9
Sample B Female 34.2
Sample C Male 22.9
Sample D Male 33.9
Superior colliculi
nTPM: 43.1
Samples: 4

Max nTPM: 53.2
Min nTPM: 29.5
Sample A Female 44.4
Sample B Female 29.5
Sample C Male 45.2
Sample D Male 53.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 28.5
Min nTPM: 26.7
Sample A Male 28.4
Sample B Male 26.7
Sample C Female 28.5
Sample D Female 27.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
100144473 Antisense, RP_110421_03_G05, Mouse strain C57BL/6J (56 days, male) 1.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org