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RABGAP1L
HPA
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  • RABGAP1L
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RABGAP1L
Synonyms FLJ38519, HHL, KIAA0471, TBC1D18
Gene descriptioni

Full gene name according to HGNC.

RAB GTPase activating protein 1 like
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband q25.1
Chromosome location (bp) 174159410 - 174995308
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

17
Ensembl ENSG00000152061 (version 109)
Entrez gene 9910
HGNC HGNC:24663
UniProt B7ZAP0 (UniProt - Evidence at protein level), Q5R372 (UniProt - Evidence at protein level)
neXtProt NX_B7ZAP0, NX_Q5R372
GeneCards RABGAP1L
Antibodypedia RABGAP1L antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

GTP-hydrolysis activating protein (GAP) for small GTPase RAB22A, converting active RAB22A-GTP to the inactive form RAB22A-GDP 1. Plays a role in endocytosis and intracellular protein transport. Recruited by ANK2 to phosphatidylinositol 3-phosphate (PI3P)-positive early endosomes, where it inactivates RAB22A, and promotes polarized trafficking to the leading edge of the migrating cells. Part of the ANK2/RABGAP1L complex which is required for the polarized recycling of fibronectin receptor ITGA5 ITGB1 to the plasma membrane that enables continuous directional cell migration (By similarity). [Q5R372]
... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

GTPase activation [Q5R372]
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Endocytosis, Protein transport, Transport [Q5R372]
Gene summary (Entrez)i

Useful information about the gene from Entrez

Enables GTPase activator activity and small GTPase binding activity. Acts upstream of or within regulation of protein localization. Located in Golgi apparatus; early endosome; and nucleus. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RABGAP1L-201
ENSP00000251507
ENST00000251507
Q5R372
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
F1LJ00
[Target identity:100%; Query identity:100%] TBC1 domain family, member 18
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005634 [nucleus]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005794 [Golgi apparatus]
GO:0005929 [cilium]
GO:0006897 [endocytosis]
GO:0015031 [protein transport]
GO:0031267 [small GTPase binding]
GO:0031410 [cytoplasmic vesicle]
GO:0032880 [regulation of protein localization]
GO:0090630 [activation of GTPase activity]
Show all
815 aa
92.5 kDa
No 2
RABGAP1L-202
ENSP00000318603
ENST00000325589
Q5R372
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005634 [nucleus]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005794 [Golgi apparatus]
GO:0006897 [endocytosis]
GO:0015031 [protein transport]
GO:0031267 [small GTPase binding]
GO:0031410 [cytoplasmic vesicle]
GO:0032880 [regulation of protein localization]
GO:0090630 [activation of GTPase activity]
Show all
358 aa
41.5 kDa
No 1
RABGAP1L-203
ENSP00000281844
ENST00000347255
Q5R372
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005634 [nucleus]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005794 [Golgi apparatus]
GO:0006897 [endocytosis]
GO:0015031 [protein transport]
GO:0031267 [small GTPase binding]
GO:0031410 [cytoplasmic vesicle]
GO:0032880 [regulation of protein localization]
GO:0090630 [activation of GTPase activity]
Show all
378 aa
43.9 kDa
No 1
RABGAP1L-204
ENSP00000350027
ENST00000357444
Q5R372
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005794 [Golgi apparatus]
GO:0006897 [endocytosis]
GO:0015031 [protein transport]
GO:0031267 [small GTPase binding]
GO:0031410 [cytoplasmic vesicle]
GO:0032880 [regulation of protein localization]
GO:0090630 [activation of GTPase activity]
Show all
605 aa
68 kDa
No 0
RABGAP1L-205
ENSP00000356660
ENST00000367687
Q5R372
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005634 [nucleus]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005794 [Golgi apparatus]
GO:0006897 [endocytosis]
GO:0015031 [protein transport]
GO:0031267 [small GTPase binding]
GO:0031410 [cytoplasmic vesicle]
GO:0032880 [regulation of protein localization]
GO:0090630 [activation of GTPase activity]
Show all
377 aa
43.8 kDa
No 1
RABGAP1L-206
ENSP00000356661
ENST00000367688
B7ZAP0
[Direct mapping] Rab GTPase-activating protein 1-like, isoform 10
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
253 aa
29 kDa
No 0
RABGAP1L-207
ENSP00000489605
ENST00000367690
A0A0U1RRM5
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
252 aa
28.4 kDa
No 0
RABGAP1L-208
ENSP00000375916
ENST00000392064
F5H8L0
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
308 aa
35.6 kDa
No 0
RABGAP1L-209
ENSP00000403136
ENST00000457696
A0A0C4DG54
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
582 aa
65 kDa
No 0
RABGAP1L-211
ENSP00000435911
ENST00000465412
E9PS63
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
190 aa
22.5 kDa
No 0
RABGAP1L-213
ENSP00000489213
ENST00000474375
A0A0U1RQX4
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0090630 [activation of GTPase activity]
Show all
166 aa
19.3 kDa
No 0
RABGAP1L-214
ENSP00000434600
ENST00000478442
Q5R372
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005794 [Golgi apparatus]
GO:0006897 [endocytosis]
GO:0015031 [protein transport]
GO:0031267 [small GTPase binding]
GO:0031410 [cytoplasmic vesicle]
GO:0032880 [regulation of protein localization]
GO:0090630 [activation of GTPase activity]
Show all
72 aa
8.7 kDa
No 0
RABGAP1L-215
ENSP00000489188
ENST00000485114
A0A0U1RQV7
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
87 aa
10.3 kDa
No 0
RABGAP1L-216
ENSP00000432490
ENST00000486220
Q5R372
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005794 [Golgi apparatus]
GO:0006897 [endocytosis]
GO:0015031 [protein transport]
GO:0031267 [small GTPase binding]
GO:0031410 [cytoplasmic vesicle]
GO:0032880 [regulation of protein localization]
GO:0090630 [activation of GTPase activity]
Show all
72 aa
8.7 kDa
No 0
RABGAP1L-218
ENSP00000420660
ENST00000489615
Q5R372
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0005634 [nucleus]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005794 [Golgi apparatus]
GO:0006897 [endocytosis]
GO:0015031 [protein transport]
GO:0031267 [small GTPase binding]
GO:0031410 [cytoplasmic vesicle]
GO:0032880 [regulation of protein localization]
GO:0090630 [activation of GTPase activity]
Show all
370 aa
42.7 kDa
No 0
RABGAP1L-220
ENSP00000489163
ENST00000529145
A0A0U1RQT5
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0016020 [membrane]
GO:0090630 [activation of GTPase activity]
Show all
111 aa
13.2 kDa
No 1
RABGAP1L-223
ENSP00000507884
ENST00000681986
A0A804HKD7
[Direct mapping] Rab GTPase-activating protein 1-like
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005096 [GTPase activator activity]
GO:0090630 [activation of GTPase activity]
Show all
1051 aa
119.4 kDa
No 2

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