MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.1 nTPM
HPA Brain:82.9 nTPM
GTEx:15.1 nTPM
FANTOM5:55.3 Scaled Tags Per Million
Pig:74.6 nTPM
Mouse:47.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 82.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.2
2219 Male, age 76, both hemispheres 102.3
1827 Male, age 72, unknown 76.6
1833 Male, age 53, unknown 75.0
1830 Male, age 51, unknown 73.9
2411 Female, age 72, unknown 71.1
2666 Male, age 74, left hemisphere 66.6
2828 Female, age 72, unknown 66.6
1870 Female, age 42, unknown 66.5
2586 Male, age 75, left hemisphere 65.3
2019 Male, age 18, unknown 57.5
Dorsal raphe nucleus
nTPM: 68.4
2047 Male, age 72, unknown 75.6
2750 Male, age 76, both hemispheres 73.9
2016 Female, age 72, unknown 67.3
2298 Female, age 72, unknown 63.6
1828 Male, age 53, unknown 61.6
Inferior colliculus
nTPM: 75.0
2849 Male, age 72, unknown 83.4
2097 Female, age 72, unknown 74.6
1890 Male, age 53, unknown 71.6
1848 Female, age 42, unknown 70.2
Median raphe nucleus
nTPM: 79.2
2220 Male, age 76, midline 79.2
Periaquaductal grey, anterior
nTPM: 70.3
1947 Male, age 18, unknown 76.9
1795 Male, age 51, unknown 69.4
2502 Female, age 75, unknown 64.5
Periaquaductal grey, dorsal
nTPM: 71.6
1840 Male, age 53, unknown 77.4
1831 Male, age 72, unknown 74.0
2850 Male, age 76, both hemispheres 67.6
2464 Female, age 72, unknown 67.3
Periaquaductal grey, lateral
nTPM: 68.2
2053 Male, age 18, unknown 74.4
2140 Male, age 76, both hemispheres 68.0
2272 Male, age 74, both hemispheres 62.2
Pretectal area
nTPM: 68.1
2825 Male, age 18, unknown 78.9
2407 Male, age 75, both hemispheres 78.8
2316 Male, age 76, right hemisphere 73.7
2224 Female, age 72, unknown 70.7
1815 Male, age 53, unknown 68.1
1816 Male, age 51, unknown 66.1
2667 Female, age 75, unknown 65.7
1944 Female, age 72, unknown 65.6
2273 Male, age 74, both hemispheres 61.2
1817 Female, age 42, unknown 60.6
2007 Male, age 72, unknown 60.1
Red nucleus
nTPM: 70.4
2725 Female, age 75, unknown 77.8
2584 Male, age 75, left hemisphere 77.1
2588 Male, age 74, left hemisphere 76.8
2503 Female, age 72, unknown 73.8
1904 Male, age 53, unknown 71.3
2823 Male, age 76, right hemisphere 70.1
1821 Female, age 72, unknown 69.7
1865 Male, age 51, unknown 68.7
2227 Male, age 72, unknown 68.6
1954 Female, age 42, unknown 68.2
2769 Male, age 72, unknown 66.6
2785 Male, age 18, unknown 55.8
Substantia nigra
nTPM: 82.9
1916 Female, age 42, unknown 103.8
2699 Male, age 18, unknown 88.7
2241 Male, age 72, unknown 88.1
1941 Male, age 53, unknown 84.5
2590 Female, age 75, unknown 82.6
1851 Male, age 51, unknown 81.8
2409 Female, age 72, unknown 80.3
2665 Male, age 74, both hemispheres 75.5
2583 Male, age 75, right hemisphere 74.8
1889 Female, age 72, unknown 69.0
Superior colliculus
nTPM: 68.5
1895 Male, age 76, right hemisphere 80.5
1839 Male, age 51, unknown 72.2
2664 Male, age 75, both hemispheres 71.8
2261 Male, age 18, unknown 70.8
1796 Male, age 53, unknown 70.1
2587 Male, age 74, left hemisphere 69.6
2668 Female, age 75, unknown 68.9
2087 Female, age 72, unknown 63.9
1913 Female, age 42, unknown 60.7
1995 Male, age 72, unknown 56.4
Ventral tegmental area
nTPM: 76.7
2218 Male, age 76, both hemispheres 84.0
1915 Female, age 42, unknown 81.4
2410 Female, age 72, unknown 77.9
1942 Male, age 51, unknown 74.5
2021 Male, age 53, unknown 72.2
2223 Female, age 72, unknown 70.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.1
Samples: 139

Max nTPM: 25.4
Min nTPM: 6.3
Std nTPM: 3.5
Median nTPM: 15.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 25.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 25.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 25.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 23.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 22.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 20.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 20.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 20.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 20.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.3
FF:10158-103A5 76 years, female 55.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.6
Samples: 4

Max nTPM: 99.3
Min nTPM: 53.9
Sample A Female 79.3
Sample B Female 65.9
Sample C Male 99.3
Sample D Male 53.9
Midbrain
nTPM: 66.0
Samples: 4

Max nTPM: 75.8
Min nTPM: 57.6
Sample A Female 57.8
Sample B Female 72.7
Sample C Male 57.6
Sample D Male 75.8
Periaqueductal gray
nTPM: 65.0
Samples: 3

Max nTPM: 70.7
Min nTPM: 60.3
Sample B Female 63.9
Sample C Male 70.7
Sample D Male 60.3
Superior colliculi
nTPM: 60.8
Samples: 4

Max nTPM: 64.9
Min nTPM: 54.4
Sample A Female 64.9
Sample B Female 60.6
Sample C Male 54.4
Sample D Male 63.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 47.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.4
Samples: 4

Max nTPM: 51.2
Min nTPM: 42.1
Sample A Male 42.1
Sample B Male 51.2
Sample C Female 49.3
Sample D Female 47.0

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