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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:163.3 nTPM
HPA Brain:185.6 nTPM
GTEx:163.3 nTPM
FANTOM5:52.2 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

185.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 185.6
2565 Male, age 75, midline 223.3
2194 Female, age 79, both hemispheres 211.7
1981 Female, age 72, midline 199.9
2816 Male, age 47, midline 156.9
2048 Male, age 55, midline 136.4
Cervical spinal cord, dorsal horn
nTPM: 162.7
2173 Female, age 72, unknown 210.7
2296 Male, age 66, both hemispheres 180.2
2069 Male, age 47, both hemispheres 170.4
1877 Male, age 55, unknown 159.2
2721 Male, age 90, both hemispheres 132.6
2297 Male, age 75, both hemispheres 123.0
Cervical spinal cord, ventral horn
nTPM: 181.5
2809 Male, age 90, both hemispheres 212.0
2480 Male, age 75, both hemispheres 210.8
2068 Male, age 55, unknown 198.4
2098 Female, age 72, unknown 176.1
2295 Male, age 66, both hemispheres 149.4
2820 Female, age 79, both hemispheres 142.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 163.3
Samples: 159

Max nTPM: 334.4
Min nTPM: 70.1
Std nTPM: 49.4
Median nTPM: 152.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 334.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 304.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 304.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 301.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 283.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 269.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 265.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 263.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 261.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 260.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 257.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 255.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 237.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 235.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 232.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 230.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 230.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 228.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 228.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 224.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 221.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 221.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 220.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 220.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 215.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 214.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 213.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 208.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 206.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 205.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 203.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 203.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 199.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 199.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 197.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 196.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 196.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 188.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 187.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 182.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 181.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 181.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 181.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 180.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 180.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 179.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 178.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 178.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 176.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 176.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 174.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 174.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 174.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 173.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 172.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 171.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 170.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 170.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 169.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 169.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 169.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 168.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 168.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 167.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 166.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 166.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 164.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 164.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 164.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 162.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 161.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 159.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 159.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 157.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 155.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 154.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 153.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 153.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 153.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 152.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 151.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 150.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 150.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 150.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 149.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 149.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 148.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 146.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 145.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 144.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 144.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 144.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 144.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 144.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 143.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 143.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 143.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 142.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 141.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 139.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 138.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 138.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 137.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 136.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 136.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 135.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 135.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 135.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 134.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 134.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 134.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 133.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 133.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 133.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 132.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 131.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 130.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 130.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 129.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 128.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 127.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 126.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 125.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 125.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 125.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 124.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 124.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 124.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 123.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 122.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 121.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 120.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 120.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 120.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 119.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 118.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 118.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 117.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 117.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 113.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 113.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 112.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 110.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 109.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 107.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 106.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 105.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 103.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 102.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 99.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 96.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 93.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 93.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 85.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 85.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 78.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 74.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 70.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 52.2
FF:10181-103D1 60 years, female 63.5
FF:10159-103A6 76 years, female 40.9

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