We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATP5F1A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ATP5F1A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:303.2 nTPM
FANTOM5:214.9 Scaled Tags Per Million
Pig:73.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040622Antibody HPA044202Antibody CAB013067
Glial cells LowHighHigh
Neuronal cells HighHighHigh







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

303.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 303.2
Samples: 246

Max nTPM: 581.4
Min nTPM: 159.6
Std nTPM: 64.2
Median nTPM: 300.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 581.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 504.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 466.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 460.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 451.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 449.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 449.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 449.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 446.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 446.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 438.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 431.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 421.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 409.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 405.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 399.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 399.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 394.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 394.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 391.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 390.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 389.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 388.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 388.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 387.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 383.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 380.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 380.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 380.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 379.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 377.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 377.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 371.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 370.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 367.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 364.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 361.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 360.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 359.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 357.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 356.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 355.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 355.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 352.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 351.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 350.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 349.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 348.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 348.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 348.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 347.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 346.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 345.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 344.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 344.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 343.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 343.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 341.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 341.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 339.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 338.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 337.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 335.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 334.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 333.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 333.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 332.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 332.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 331.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 331.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 330.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 329.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 328.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 327.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 326.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 325.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 325.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 325.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 325.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 325.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 324.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 323.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 323.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 323.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 322.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 322.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 321.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 320.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 320.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 320.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 320.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 319.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 319.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 319.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 319.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 317.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 317.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 317.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 315.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 315.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 314.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 313.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 312.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 312.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 311.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 311.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 311.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 311.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 310.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 307.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 306.9
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 306.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 306.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 305.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 304.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 304.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 303.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 303.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 303.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 302.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 302.1
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 301.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 300.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 300.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 300.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 300.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 298.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 298.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 298.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 297.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 297.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 297.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 296.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 296.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 295.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 294.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 293.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 292.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 292.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 291.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 291.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 289.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 289.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 287.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 287.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 287.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 286.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 285.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 284.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 282.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 281.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 281.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 280.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 278.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 278.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 278.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 276.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 276.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 276.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 275.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 275.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 274.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 274.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 274.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 269.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 268.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 268.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 268.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 268.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 268.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 268.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 267.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 267.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 267.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 267.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 266.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 266.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 265.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 265.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 264.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 264.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 263.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 259.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 257.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 256.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 256.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 256.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 254.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 254.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 254.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 254.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 253.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 253.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 252.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 251.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 250.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 248.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 248.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 247.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 247.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 246.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 246.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 245.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 245.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 245.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 244.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 244.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 244.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 244.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 244.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 243.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 241.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 240.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 239.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 238.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 238.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 238.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 236.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 231.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 230.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 229.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 226.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 226.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 224.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 223.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 221.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 221.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 220.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 219.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 214.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 214.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 214.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 213.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 209.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 208.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 205.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 195.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 193.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 192.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 183.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 183.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 168.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 164.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 163.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 161.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 159.6
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

214.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 214.9
FF:10164-103B2 76 years, female 214.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.8
Pig sample Sample description nTPM
Caudate
nTPM: 73.8
Samples: 4

Max nTPM: 83.5
Min nTPM: 65.5
Sample A Female 70.6
Sample B Female 75.6
Sample C Male 83.5
Sample D Male 65.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org