We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATP5F1A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ATP5F1A
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:325.5 nTPM
HPA:325.5 nTPM
GTEx:280.6 nTPM
FANTOM5:353.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA040622Antibody HPA044202Antibody CAB013067
Glandular cells HighHighHigh







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

325.5
overview
Male, age 65
Small intestine sample 232
nTPM: 385.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 320.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 262.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 333.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

280.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 280.6
Samples: 187

Max nTPM: 617.5
Min nTPM: 118.5
Std nTPM: 87.0
Median nTPM: 273.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 617.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 543.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 491.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 483.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 471.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 465.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 461.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 452.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 438.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 429.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 428.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 423.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 415.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 409.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 407.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 404.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 397.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 393.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 388.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 386.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 385.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 384.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 380.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 380.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 380.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 379.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 378.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 370.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 370.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 370.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 368.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 365.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 364.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 364.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 363.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 362.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 360.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 357.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 349.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 349.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 347.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 346.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 345.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 343.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 342.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 341.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 340.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 337.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 336.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 334.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 332.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 330.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 328.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 320.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 320.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 317.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 317.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 316.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 313.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 310.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 310.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 309.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 308.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 307.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 306.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 305.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 305.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 304.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 301.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 296.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 295.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 295.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 295.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 295.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 291.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 291.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 291.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 288.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 288.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 283.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 283.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 283.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 282.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 280.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 280.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 280.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 279.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 279.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 279.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 276.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 276.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 274.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 274.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 273.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 272.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 268.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 268.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 267.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 267.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 266.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 266.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 265.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 262.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 261.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 261.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 260.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 260.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 257.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 256.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 256.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 255.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 254.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 252.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 251.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 251.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 250.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 249.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 248.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 247.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 244.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 241.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 241.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 240.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 238.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 237.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 236.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 232.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 228.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 228.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 227.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 226.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 226.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 223.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 222.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 222.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 220.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 213.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 213.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 212.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 210.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 209.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 209.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 206.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 205.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 205.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 204.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 203.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 203.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 202.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 202.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 202.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 200.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 200.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 200.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 199.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 199.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 199.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 198.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 197.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 196.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 192.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 189.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 188.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 187.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 187.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 185.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 183.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 183.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 182.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 182.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 181.4
GTEX-1192X-2526-SM-59868 50-59 years, male 180.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 174.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 173.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 160.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 157.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 153.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 147.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 143.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 143.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 139.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 133.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 129.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 127.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 126.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 120.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 118.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

353.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 353.6
FF:10024-101D6 15,40,85 years, mixed 353.6

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org