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SPARCL1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1285.7 nTPM
FANTOM5:2332.7 Scaled Tags Per Million
Pig:903.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB026225
Glial cells High
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1285.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1285.7
Samples: 246

Max nTPM: 3017.6
Min nTPM: 170.7
Std nTPM: 517.5
Median nTPM: 1214.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 3017.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 2924.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2866.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2766.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 2412.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 2409.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2399.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2397.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2352.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 2340.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2320.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2237.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2222.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2167.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2167.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2156.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 2143.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2112.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2090.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2064.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 2052.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2013.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1979.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1979.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1938.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1935.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1932.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1929.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1923.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1921.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1902.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1870.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1856.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1840.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1830.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1828.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1812.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1796.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1795.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1794.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1788.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1786.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1782.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1773.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1768.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1764.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1760.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1741.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1729.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1694.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1690.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1685.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1675.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1667.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1665.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1662.6
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1655.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1631.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1618.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1611.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1610.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1605.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1603.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1595.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1566.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1560.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1537.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1534.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1532.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1529.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1526.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1522.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1522.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1516.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1503.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1498.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1495.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1488.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1488.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1487.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1486.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1465.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1462.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1459.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1453.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1443.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1443.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1428.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1423.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1422.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1411.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1408.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1407.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1402.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1396.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1387.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1386.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1385.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1384.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1347.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1344.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1342.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1341.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1338.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1337.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1336.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1333.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1333.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1331.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1328.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1320.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1312.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1312.6
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1312.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1287.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1286.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1260.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1250.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1243.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1238.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1237.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1225.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1219.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1210.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1208.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1197.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1196.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1193.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1186.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1176.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1171.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1171.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1170.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1167.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1161.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1147.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1124.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1117.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1117.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1115.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1115.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1112.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1108.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1103.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1090.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1079.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1078.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1074.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1067.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1059.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1059.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1049.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1047.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1047.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1046.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1044.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1043.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1040.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1022.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1012.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1011.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1008.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1005.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1004.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 997.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 997.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 995.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 984.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 981.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 977.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 973.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 968.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 967.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 964.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 962.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 952.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 950.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 948.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 939.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 936.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 936.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 932.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 924.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 923.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 917.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 913.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 904.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 901.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 901.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 900.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 899.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 899.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 898.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 898.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 882.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 873.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 861.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 858.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 855.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 854.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 852.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 835.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 823.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 821.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 816.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 808.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 799.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 794.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 789.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 769.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 764.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 756.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 750.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 741.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 741.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 737.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 730.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 726.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 717.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 711.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 700.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 693.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 689.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 687.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 678.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 675.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 674.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 667.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 655.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 623.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 618.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 618.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 609.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 591.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 588.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 541.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 526.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 477.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 419.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 411.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 287.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 255.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 254.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 216.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 207.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 170.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2332.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2332.7
FF:10164-103B2 76 years, female 2332.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

903.3
Pig sample Sample description nTPM
Caudate
nTPM: 903.3
Samples: 4

Max nTPM: 1067.2
Min nTPM: 762.8
Sample A Female 1067.2
Sample B Female 882.7
Sample C Male 900.3
Sample D Male 762.8

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