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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:193.1 nTPM
HPA Brain:179.5 nTPM
GTEx:193.1 nTPM
FANTOM5:323.9 Scaled Tags Per Million
Pig:100.1 nTPM
Mouse:97.9 nTPM
Allen mouse:6.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.5
Sample id Sample description nTPM
Amygdala
nTPM: 179.5
2814 Male, age 76, right hemisphere 201.1
2695 Female, age 67, right hemisphere 196.4
2514 Male, age 75, right hemisphere 181.7
1987 Female, age 91, left hemisphere 162.2
2517 Female, age 94, left hemisphere 155.9
Basal amygdala
nTPM: 177.5
2827 Female, age 67, right hemisphere 190.7
2609 Male, age 75, right hemisphere 184.7
1955 Male, age 76, both hemispheres 180.5
2110 Male, age 80, left hemisphere 176.1
2685 Female, age 94, left hemisphere 170.6
2243 Female, age 91, right hemisphere 162.6
Central amygdala
nTPM: 174.5
2701 Female, age 91, right hemisphere 181.4
1905 Male, age 76, both hemispheres 179.2
2826 Female, age 94, left hemisphere 174.5
2239 Male, age 80, left hemisphere 173.6
2515 Male, age 75, right hemisphere 163.6
Corticomedial amygdala
nTPM: 175.6
2240 Male, age 76, both hemispheres 192.2
2535 Female, age 67, right hemisphere 182.9
2429 Female, age 94, left hemisphere 179.2
2829 Male, age 80, left hemisphere 174.5
2428 Male, age 75, right hemisphere 170.4
2242 Female, age 91, right hemisphere 154.3
Lateral amygdala
nTPM: 176.6
2830 Female, age 67, right hemisphere 200.8
2516 Male, age 75, right hemisphere 191.3
1883 Male, age 76, both hemispheres 187.8
2256 Male, age 80, left hemisphere 170.4
2534 Female, age 94, left hemisphere 165.9
2255 Female, age 91, right hemisphere 143.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

193.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 193.1
Samples: 152

Max nTPM: 303.5
Min nTPM: 91.6
Std nTPM: 36.8
Median nTPM: 186.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 303.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 287.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 284.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 278.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 268.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 263.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 263.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 261.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 261.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 258.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 254.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 249.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 248.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 246.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 246.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 244.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 242.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 242.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 241.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 239.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 239.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 239.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 236.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 235.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 233.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 230.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 227.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 227.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 219.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 219.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 219.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 218.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 217.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 214.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 213.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 212.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 212.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 212.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 211.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 211.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 209.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 209.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 208.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 208.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 206.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 206.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 203.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 203.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 203.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 201.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 201.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 200.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 199.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 198.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 198.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 198.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 197.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 197.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 197.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 196.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 196.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 195.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 195.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 195.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 195.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 194.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 194.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 194.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 193.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 193.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 193.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 191.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 191.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 191.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 188.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 187.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 186.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 185.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 185.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 185.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 185.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 185.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 185.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 185.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 184.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 184.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 184.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 184.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 183.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 182.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 182.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 182.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 181.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 181.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 181.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 181.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 181.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 179.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 178.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 178.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 178.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 177.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 176.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 176.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 176.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 175.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 175.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 175.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 174.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 174.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 174.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 174.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 174.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 174.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 171.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 170.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 170.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 170.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 169.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 169.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 169.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 168.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 168.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 168.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 164.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 162.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 162.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 162.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 160.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 159.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 158.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 155.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 155.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 155.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 155.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 154.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 154.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 154.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 151.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 147.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 144.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 142.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 141.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 136.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 132.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 129.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 127.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 122.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 117.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 113.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 104.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 91.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

323.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 323.9
FF:10151-102I7 76 years, female 323.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.1
Pig sample Sample description nTPM
Amygdala
nTPM: 100.1
Samples: 4

Max nTPM: 106.5
Min nTPM: 91.4
Sample A Female 106.5
Sample B Female 105.3
Sample C Male 97.3
Sample D Male 91.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 97.9
Samples: 4

Max nTPM: 112.1
Min nTPM: 89.3
Sample A Male 94.5
Sample B Male 112.1
Sample C Female 89.3
Sample D Female 95.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.8
68445161 Antisense, RP_050111_02_H06, Mouse strain C57BL/6J (56 days, male) 12.5
572 Antisense, RP_Baylor_103185, Mouse strain C57BL/6J (56 days, male) 1.2
571 Antisense, RP_Baylor_103185, Mouse strain C57BL/6J (56 days, male) 0.8

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