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TISSUE HYPOTHALAMUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Hypothalamus
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:51.9 nTPM
HPA Brain:76.4 nTPM
GTEx:51.9 nTPM
Mouse:34.5 nTPM
Allen mouse:1.0 Expression energy

HYPOTHALAMUS - Annotated protein expression
Pending normal tissue analysis

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.4
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 76.4
2226 Male, age 75, left hemisphere 82.6
1961 Female, age 42, unknown 70.3
Dorsomedial nucleus
nTPM: 52.4
1989 Male, age 62, unknown 66.2
2017 Female, age 42, unknown 49.6
2041 Female, age 72, unknown 41.6
Lateral hypothalamic area
nTPM: 56.3
1791 Male, age 80, right hemisphere 60.4
2271 Male, age 75, both hemispheres 59.1
2228 Male, age 66, unknown 58.4
2412 Male, age 62, unknown 47.4
Mammillary body
nTPM: 34.5
2413 Male, age 66, unknown 43.7
1923 Female, age 72, unknown 41.6
1948 Female, age 72, unknown 31.2
1834 Female, age 42, unknown 28.0
1945 Male, age 80, right hemisphere 28.0
Paraventricular nucleus
nTPM: 37.7
2700 Male, age 62, unknown 37.7
Preoptic area
nTPM: 47.8
1907 Male, age 80, right hemisphere 63.5
1861 Female, age 42, unknown 45.9
2414 Female, age 72, unknown 33.9
Supraoptic nucleus
nTPM: 31.3
2835 Female, age 72, unknown 43.7
1894 Female, age 72, unknown 29.9
2043 Male, age 62, unknown 20.3
Ventromedial nucleus
nTPM: 64.6
1982 Female, age 72, unknown 68.4
1822 Female, age 42, unknown 60.8

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.9
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 51.9
Samples: 202

Max nTPM: 149.4
Min nTPM: 3.6
Std nTPM: 21.0
Median nTPM: 53.0
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 149.4
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 147.8
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 112.7
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 111.6
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 99.1
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 93.6
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 91.8
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 82.9
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 81.8
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 80.7
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 79.5
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 78.6
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 77.9
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 77.3
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 76.4
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 75.5
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 75.2
GTEX-13IVO-0011-R8a-SM-5L3DY 70-79 years, male 74.0
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 73.6
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 73.6
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 72.1
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 71.9
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 71.8
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 70.7
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 70.2
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 69.9
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 69.9
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 69.2
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 69.2
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 68.2
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 68.1
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 67.8
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 67.2
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 66.7
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 66.7
GTEX-Q2AG-0011-R8A-SM-2HMK5 40-49 years, female 66.5
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 66.5
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 66.3
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 65.5
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 65.3
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 65.2
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 65.1
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 65.1
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 64.9
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 64.9
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 64.8
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 64.8
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 64.5
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 63.8
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 63.8
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 63.7
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 63.4
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 63.4
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 62.8
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 62.7
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 62.6
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 62.5
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 62.0
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 61.9
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 61.5
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 61.1
GTEX-13NZ8-0011-R8b-SM-5KM48 60-69 years, female 61.0
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 60.8
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 60.4
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 60.1
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 59.8
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 59.8
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 59.7
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 59.7
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 59.5
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 59.0
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 58.8
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 58.5
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 58.3
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 58.3
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 58.0
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 57.5
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 57.1
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 57.1
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 57.0
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 57.0
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 56.9
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 56.7
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 56.5
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 56.3
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 56.2
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 56.2
GTEX-NL3H-0011-R8a-SM-DIPDY 60-69 years, male 56.2
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 55.9
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 55.3
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 55.3
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 55.1
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 54.8
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 54.4
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 54.3
GTEX-S7SE-0011-R8A-SM-2XCDG 50-59 years, male 54.2
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 53.9
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 53.8
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 53.7
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 53.4
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 53.4
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 52.7
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 52.4
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 51.8
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 51.8
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 51.6
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 51.2
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 51.0
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 50.6
GTEX-RU72-0011-R8A-SM-2TF61 50-59 years, female 50.4
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 50.4
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 50.3
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 50.1
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 50.1
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 49.8
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 49.6
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 49.6
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 49.0
GTEX-NPJ7-0011-R8a-SM-2I3G2 60-69 years, female 49.0
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 49.0
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 48.6
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 48.5
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 48.4
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 48.1
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 47.7
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 47.7
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 47.7
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 46.2
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 46.1
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 45.7
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 45.7
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 45.1
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 44.8
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 44.3
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 44.2
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 44.0
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 43.9
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 43.4
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 43.4
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 43.1
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 43.0
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 42.8
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 41.6
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 41.4
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 41.1
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 40.6
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 40.4
GTEX-TSE9-0011-R8A-SM-3DB7R 60-69 years, female 40.1
GTEX-18464-0011-R8a-SM-72D4Z 50-59 years, male 39.9
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 39.8
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 39.8
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 39.6
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 38.8
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 38.7
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 38.7
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 38.6
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 38.2
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 37.9
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 37.6
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 37.5
GTEX-R55E-0011-R8A-SM-2TC66 20-29 years, male 35.9
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 35.7
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 35.6
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 35.5
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 35.1
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 34.9
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 34.8
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 34.6
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 34.5
GTEX-N7MT-0011-R8a-SM-2I5GU 60-69 years, female 34.3
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 33.9
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 33.9
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 31.6
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 30.0
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 29.9
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 29.9
GTEX-14LLW-0011-R8a-SM-62LFG 70-79 years, female 26.4
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 26.3
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 26.0
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 25.4
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 24.5
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 24.4
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 24.4
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 23.4
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 23.2
GTEX-183WM-0011-R8a-SM-7189W 70-79 years, female 21.2
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 20.8
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 20.3
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 20.1
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 20.0
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 19.6
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 19.4
GTEX-QDT8-0011-R8A-SM-32PKE 30-39 years, female 18.2
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 17.4
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 17.2
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 17.0
GTEX-OHPN-0011-R8A-SM-33HBT 60-69 years, female 11.4
GTEX-145MI-0011-R8b-SM-5PNZ9 60-69 years, female 10.5
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 6.5
GTEX-X4EP-0011-R8B-SM-4QASL 60-69 years, female 5.3
GTEX-XLM4-0011-R8A-SM-4AT44 60-69 years, male 4.0
GTEX-1H3VE-0011-R8b-SM-A9G1L 40-49 years, male 3.6
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HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.5
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 34.5
Samples: 4

Max nTPM: 41.9
Min nTPM: 27.3
Sample A Male 41.9
Sample B Male 40.2
Sample C Female 28.6
Sample D Female 27.3

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.0
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 1.0
69735670 Antisense, RP_050503_03_C06, Mouse strain C57BL/6J (56 days, male) 1.0

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