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TISSUE PRIMARY DATA BASAL GANGLIA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Basal ganglia
BASAL GANGLIA - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1899.2 nTPM
HPA Brain:2124.6 nTPM
GTEx:1899.2 nTPM
FANTOM5:3794.5 Scaled Tags Per Million
Pig:2631.1 nTPM
Mouse:688.3 nTPM
Allen mouse:30.0 Expression energy

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA038171Antibody CAB006908
Glial cells MediumLow
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2124.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1800.9
2846 Female, age 79, unknown 3103.1
2288 Male, age 75, left hemisphere 2100.3
2290 Female, age 72, unknown 1928.8
1857 Female, age 85, left hemisphere 1735.7
2289 Male, age 61, right hemisphere 1552.7
1854 Male, age 80, left hemisphere 1549.6
1781 Male, age 74, unknown 1490.7
2481 Female, age 94, left hemisphere 946.0
Globus pallidus, externus
nTPM: 258.3
2646 Male, age 61, right hemisphere 318.6
2395 Male, age 75, both hemispheres 314.1
1996 Male, age 80, right hemisphere 247.1
2567 Female, age 72, unknown 233.8
2772 Female, age 79, unknown 177.9
Globus pallidus, internus
nTPM: 180.4
2483 Female, age 94, right hemisphere 564.4
2037 Male, age 80, right hemisphere 227.3
2566 Female, age 72, unknown 143.9
1818 Male, age 74, unknown 94.8
2778 Female, age 91, both hemispheres 93.8
2287 Male, age 75, right hemisphere 80.8
2111 Female, age 85, right hemisphere 58.0
Nucleus accumbens
nTPM: 1054.1
2286 Male, age 75, left hemisphere 1612.0
1783 Male, age 74, unknown 1328.3
2824 Male, age 61, right hemisphere 1233.7
1806 Female, age 85, left hemisphere 1172.6
1856 Female, age 91, right hemisphere 1170.7
2698 Female, age 72, unknown 963.9
2391 Female, age 94, left hemisphere 684.2
2732 Male, age 80, right hemisphere 266.9
Nucleus basalis of Meynert
nTPM: 1333.0
2393 Male, age 80, right hemisphere 1954.0
2484 Female, age 94, left hemisphere 1595.2
2821 Male, age 75, both hemispheres 1349.7
2569 Male, age 61, both hemispheres 433.0
Nucleus of the diagonal band
nTPM: 1384.1
2029 Male, age 61, right hemisphere 2071.7
2775 Male, age 80, right hemisphere 1625.6
1812 Female, age 91, both hemispheres 1453.4
2195 Female, age 85, both hemispheres 1312.2
1979 Male, age 74, unknown 457.4
Putamen
nTPM: 2124.6
1829 Male, age 74, unknown 2686.7
2466 Female, age 79, unknown 2591.0
2489 Female, age 72, unknown 2560.9
1838 Male, age 80, right hemisphere 2281.2
2647 Male, age 75, left hemisphere 2190.4
1937 Female, age 91, right hemisphere 1420.8
2482 Female, age 94, left hemisphere 1140.7
Septal nuclei
nTPM: 942.0
2031 Female, age 72, unknown 1555.1
2629 Female, age 94, right hemisphere 1499.8
2009 Female, age 91, both hemispheres 1068.4
1960 Male, age 74, unknown 1025.6
2059 Female, age 85, both hemispheres 714.0
2199 Male, age 80, right hemisphere 375.1
2394 Male, age 61, left hemisphere 356.2
Stria terminalis, bed nucleus
nTPM: 1030.0
1974 Female, age 91, both hemispheres 1430.1
2486 Female, age 94, both hemispheres 1256.8
2201 Male, age 74, unknown 402.9

BASAL GANGLIA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1899.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1509.6
Samples: 246

Max nTPM: 4502.8
Min nTPM: 16.7
Std nTPM: 882.5
Median nTPM: 1493.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 4502.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 4358.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 4298.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 3860.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3853.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3403.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 3340.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3240.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3097.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 3086.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 3083.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 3058.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3026.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2980.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2968.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2908.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2824.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2794.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2766.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2766.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2749.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2695.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2653.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2644.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2628.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 2617.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2583.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2537.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2500.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2467.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2467.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2460.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2449.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2435.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 2429.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2427.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2417.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2404.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2401.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 2386.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2382.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2370.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2364.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2335.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 2327.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2296.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 2290.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2269.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2264.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2254.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2252.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 2240.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2225.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2214.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2210.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2176.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2121.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2114.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 2106.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2088.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 2084.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2080.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 2079.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2040.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2030.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 2019.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2011.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 2006.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2005.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2001.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1992.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1977.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1962.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1951.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1930.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1921.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1917.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1917.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1916.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1889.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1881.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1881.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1850.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1846.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1832.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1820.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1810.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1808.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1801.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1796.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1765.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1738.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1725.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1719.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1686.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1679.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1675.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1672.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1664.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1662.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1660.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1652.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1647.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1646.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1638.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1637.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1636.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1628.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1624.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1596.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1591.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1589.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1581.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1572.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1564.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1542.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1536.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1535.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1524.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1524.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1503.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1498.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1496.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1490.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1487.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1484.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1478.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1472.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1463.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1462.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1457.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1420.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1416.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1403.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1397.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1391.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1380.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1375.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1372.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1359.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1350.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1341.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1327.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1314.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1289.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1285.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1282.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1256.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1249.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1243.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1187.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1169.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1168.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1156.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1137.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1127.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1125.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1123.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1122.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1115.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1092.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1085.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1070.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1065.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1058.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1038.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 997.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 979.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 955.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 951.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 939.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 914.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 910.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 890.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 889.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 876.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 866.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 859.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 835.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 814.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 814.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 781.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 780.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 767.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 766.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 745.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 745.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 744.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 727.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 723.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 710.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 705.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 682.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 657.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 646.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 641.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 613.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 612.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 607.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 585.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 573.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 557.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 549.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 544.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 539.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 526.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 517.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 509.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 505.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 504.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 495.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 492.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 460.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 449.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 422.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 421.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 410.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 409.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 391.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 390.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 389.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 380.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 378.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 375.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 365.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 357.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 351.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 342.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 340.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 336.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 335.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 326.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 278.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 273.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 260.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 233.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 224.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 203.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 194.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 193.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 177.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 157.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 148.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 133.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 121.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 16.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 793.0
Samples: 246

Max nTPM: 2491.0
Min nTPM: 28.4
Std nTPM: 516.1
Median nTPM: 704.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 2491.0
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 2485.5
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 2346.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 2335.4
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 2316.9
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 2232.4
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 2194.1
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 2095.1
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 1951.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 1929.4
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 1814.9
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 1806.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 1805.4
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 1797.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 1787.9
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 1718.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 1691.2
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 1682.9
GTEX-14JG1-0011-R6b-SM-5YYAU 40-49 years, male 1669.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 1639.3
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 1618.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 1561.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 1521.8
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 1518.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 1515.2
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 1496.7
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 1481.8
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 1475.9
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 1461.7
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 1459.5
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 1457.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 1444.7
GTEX-11DXY-0011-R6a-SM-DNZZF 60-69 years, male 1439.9
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 1415.3
GTEX-1F6IF-0011-R6a-SM-9QEIO 60-69 years, male 1409.5
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 1387.0
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 1372.9
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 1370.8
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 1367.2
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 1335.8
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 1269.2
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 1251.0
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 1231.2
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 1217.4
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 1212.6
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 1195.3
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 1163.5
GTEX-WVLH-0011-R6A-SM-3MJFZ 50-59 years, male 1163.3
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 1160.2
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 1144.5
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 1142.5
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 1125.1
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 1120.9
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 1116.9
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 1114.5
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 1095.6
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 1093.2
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 1074.9
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 1034.9
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 1027.9
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 1022.1
GTEX-14ABY-0011-R6a-SM-5PNWR 50-59 years, male 1021.1
GTEX-1B8SF-0011-R6b-SM-7MXUD 60-69 years, male 1010.5
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 1008.6
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 995.8
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 987.9
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 975.6
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 969.7
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 967.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 963.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 960.5
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 955.5
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 954.1
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 944.5
GTEX-1HGF4-0011-R6a-SM-A96S1 60-69 years, male 940.0
GTEX-N7MT-0011-R6a-SM-2I3G3 60-69 years, female 938.2
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 937.2
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 926.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 924.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 914.5
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 913.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 908.3
GTEX-ZXG5-0011-R6a-SM-57WBZ 60-69 years, male 905.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 901.1
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 875.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 872.4
GTEX-147GR-0011-R6b-SM-5S2RO 60-69 years, male 868.9
GTEX-17HG3-0011-R6b-SM-79OK8 30-39 years, female 868.3
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 864.6
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 860.7
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 857.7
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 852.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 849.7
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 848.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 845.1
GTEX-14LZ3-0011-R6a-SM-D3L8C 60-69 years, female 843.1
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 822.1
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 805.6
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 798.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 792.2
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 781.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 780.4
GTEX-1GF9V-0011-R6b-SM-CJI2Q 60-69 years, male 760.6
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 759.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 757.1
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 753.6
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 748.6
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 747.9
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 747.7
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 742.5
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 741.4
GTEX-15DCD-0011-R6b-SM-6M46L 70-79 years, female 740.6
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 734.7
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 726.6
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 722.0
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 720.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 717.9
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 712.6
GTEX-1F6I4-0011-R6a-SM-CE6R4 60-69 years, male 712.3
GTEX-17HHY-0011-R6b-SM-7189Z 50-59 years, male 709.8
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 708.7
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 707.3
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 707.1
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 702.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 700.9
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 700.6
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 698.8
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 694.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 688.5
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 676.3
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 673.1
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 668.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 657.5
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 655.5
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 651.3
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 650.5
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 650.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 650.0
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 641.1
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 639.5
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 638.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 633.0
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 630.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 610.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 609.7
GTEX-1N2DW-0011-R6a-SM-EZ6MW 50-59 years, male 602.2
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 600.7
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 594.0
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 592.6
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 589.9
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 589.8
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 586.5
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 582.8
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 580.5
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 580.1
GTEX-1H1CY-0011-R6b-SM-CE6RP 60-69 years, female 561.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 557.4
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 553.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 546.7
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 543.2
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 538.8
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 536.2
GTEX-1CB4G-0011-R6b-SM-9QEGO 60-69 years, male 518.1
GTEX-11ONC-0011-R6a-SM-DO12A 60-69 years, male 515.9
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 515.2
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 500.1
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 498.1
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 488.6
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 485.3
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 480.5
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 472.8
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 472.6
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 469.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 468.3
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 461.8
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 460.2
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 457.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 457.1
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 455.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 447.7
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 441.3
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 433.6
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 429.0
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 425.5
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 422.2
GTEX-1GN2E-0011-R6b-SM-9QEII 60-69 years, male 418.4
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 414.4
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 410.6
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 407.6
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 405.1
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 404.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 394.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 390.4
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 387.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 380.1
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 377.2
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 354.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 347.6
GTEX-11NUK-0011-R6a-SM-DO93O 50-59 years, male 346.1
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 344.6
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 341.0
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 340.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 337.3
GTEX-XMD1-0011-R6A-SM-4AT5K 60-69 years, male 334.6
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 333.8
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 324.0
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 315.8
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 306.0
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 291.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 286.5
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 284.6
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 277.3
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 265.5
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 247.6
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 241.0
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 228.4
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 223.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 217.3
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 215.5
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 206.5
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 205.6
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 200.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 199.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 185.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 180.9
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 176.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 172.1
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 168.2
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 167.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 153.2
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 148.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 141.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 139.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 137.0
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 135.0
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 116.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 105.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 103.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 101.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 89.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 76.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 67.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 67.1
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 62.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 37.5
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 28.4
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Brain - Putamen (basal ganglia)
Average nTPM: 1899.2
Samples: 205

Max nTPM: 5505.7
Min nTPM: 78.3
Std nTPM: 1108.5
Median nTPM: 1844.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 5505.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 4806.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 4495.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 4297.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 4240.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 4214.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 4073.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 3841.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 3797.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 3745.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 3738.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 3618.5
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 3574.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 3567.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 3530.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 3462.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 3450.7
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 3416.4
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 3390.6
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 3341.1
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 3331.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 3320.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 3292.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 3291.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 3286.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 3283.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 3282.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 3189.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 3177.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 3148.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 3139.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 3122.5
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 3056.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 3041.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 3038.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 2987.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 2983.8
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 2977.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 2976.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 2945.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 2928.9
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 2887.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 2877.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 2855.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 2850.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 2849.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 2840.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 2804.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 2763.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 2747.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 2726.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 2725.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 2723.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 2721.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 2701.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 2610.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 2609.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 2573.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 2565.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 2531.7
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 2525.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 2507.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 2499.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 2479.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 2441.2
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 2433.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 2414.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 2398.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 2372.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 2370.9
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 2367.4
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 2358.3
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 2323.7
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 2267.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 2239.7
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 2223.7
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 2208.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 2186.5
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 2185.2
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 2169.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 2168.2
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 2153.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 2148.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 2130.2
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 2127.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 2119.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 2117.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 2077.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 2069.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 2065.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 2053.8
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 2050.7
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 2007.5
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 2000.1
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 1990.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 1976.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 1959.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 1948.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 1922.3
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 1890.9
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 1865.6
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 1849.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 1844.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 1824.5
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 1821.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1786.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 1784.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 1770.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 1768.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 1764.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 1742.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 1737.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 1717.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 1699.7
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 1689.3
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 1684.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 1682.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 1676.2
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 1674.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 1669.5
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 1641.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 1594.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 1577.4
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 1575.4
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 1570.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 1554.0
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 1544.7
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 1527.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 1527.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 1525.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 1464.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 1456.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 1410.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 1371.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 1362.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 1350.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 1327.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 1321.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 1307.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 1302.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 1210.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 1203.1
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 1180.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 1169.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 1146.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 1125.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 1077.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 1071.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 1056.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 1037.7
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 983.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 980.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 966.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 939.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 917.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 911.7
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 893.4
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 878.9
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 857.4
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 856.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 836.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 728.7
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 713.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 697.8
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 682.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 681.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 642.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 629.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 629.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 604.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 598.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 584.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 578.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 578.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 562.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 555.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 551.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 533.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 503.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 500.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 491.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 467.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 454.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 451.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 448.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 447.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 418.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 416.6
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 415.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 406.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 397.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 380.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 361.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 358.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 314.2
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 313.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 293.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 264.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 255.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 254.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 214.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 160.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 122.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 95.3
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 78.3
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BASAL GANGLIA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3794.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1015.4
FF:10164-103B2 76 years, female 1015.4
Nucleus accumbens
Scaled Tags Per Million: 3794.5
FF:10037-101F1 23-56 years, mixed 3794.5
Putamen
Scaled Tags Per Million: 2332.8
FF:10176-103C5 60 years, female 2332.8
Globus pallidus
Scaled Tags Per Million: 905.9
FF:10175-103C4 60 years, female 1352.9
FF:10161-103A8 76 years, female 459.0

BASAL GANGLIA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2631.1
Pig sample Sample description nTPM
Caudate
nTPM: 1359.5
Samples: 4

Max nTPM: 2029.9
Min nTPM: 688.6
Sample A Female 688.6
Sample B Female 1313.0
Sample C Male 2029.9
Sample D Male 1406.3
Putamen
nTPM: 2631.1
Samples: 4

Max nTPM: 4573.9
Min nTPM: 515.6
Sample A Female 515.6
Sample B Female 2688.7
Sample C Male 4573.9
Sample D Male 2746.2
Septum
nTPM: 151.8
Samples: 4

Max nTPM: 228.0
Min nTPM: 75.8
Sample A Female 146.7
Sample B Female 156.5
Sample C Male 75.8
Sample D Male 228.0
Ventral pallidum
nTPM: 359.9
Samples: 4

Max nTPM: 469.2
Min nTPM: 232.1
Sample A Female 232.1
Sample B Female 431.4
Sample C Male 306.9
Sample D Male 469.2

BASAL GANGLIA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

688.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 688.3
Samples: 4

Max nTPM: 948.8
Min nTPM: 509.5
Sample A Male 683.4
Sample B Male 948.8
Sample C Female 509.5
Sample D Female 611.3
Septum
nTPM: 208.6
Samples: 4

Max nTPM: 235.0
Min nTPM: 180.3
Sample A Male 222.1
Sample B Male 235.0
Sample C Female 197.1
Sample D Female 180.3
Ventral forebrain
nTPM: 262.2
Samples: 4

Max nTPM: 348.1
Min nTPM: 193.3
Sample A Male 288.2
Sample B Male 193.3
Sample C Female 348.1
Sample D Female 219.0

BASAL GANGLIA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

30.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 30.0
69153790 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 30.0
69153759 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 24.3
737 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 7.2
736 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 7.0
Pallidum
Expression energy: 14.1
69153790 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 14.1
69153759 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 10.1
737 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 1.9
736 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 1.0

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