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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1509.6 nTPM
FANTOM5:1015.4 Scaled Tags Per Million
Pig:1359.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA038171Antibody CAB006908
Glial cells MediumLow
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1509.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1509.6
Samples: 246

Max nTPM: 4502.8
Min nTPM: 16.7
Std nTPM: 882.5
Median nTPM: 1493.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 4502.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 4358.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 4298.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 3860.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3853.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3403.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 3340.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3240.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 3097.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 3086.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 3083.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 3058.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 3026.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2980.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2968.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2908.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2824.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2794.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2766.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2766.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2749.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2695.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2653.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2644.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 2628.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 2617.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2583.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2537.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2500.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2467.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2467.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2460.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2449.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2435.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 2429.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2427.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2417.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2404.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2401.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 2386.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2382.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2370.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2364.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 2335.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 2327.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2296.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 2290.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2269.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 2264.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 2254.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2252.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 2240.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2225.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2214.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 2210.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2176.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 2121.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2114.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 2106.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2088.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 2084.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2080.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 2079.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2040.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2030.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 2019.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 2011.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 2006.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2005.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2001.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1992.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1977.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1962.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1951.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1930.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1921.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1917.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1917.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1916.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1889.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1881.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1881.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1850.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1846.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1832.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1820.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1810.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1808.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1801.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1796.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1765.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1738.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1725.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1719.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1686.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1679.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1675.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1672.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1664.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1662.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1660.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1652.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1647.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1646.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1638.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1637.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1636.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1628.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1624.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1596.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1591.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1589.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1581.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1572.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1564.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1542.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1536.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1535.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1524.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1524.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1503.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1498.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1496.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1490.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1487.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1484.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1478.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1472.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1463.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1462.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1457.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1420.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1416.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1403.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1397.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1391.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1380.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1375.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1372.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1359.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1350.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1341.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1327.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1314.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1289.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1285.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1282.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1256.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1249.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1243.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1187.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1169.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1168.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1156.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1137.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1127.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1125.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1123.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1122.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1115.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1092.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1085.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1070.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1065.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1058.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1038.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 997.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 979.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 955.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 951.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 939.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 914.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 910.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 890.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 889.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 876.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 866.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 859.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 835.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 814.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 814.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 781.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 780.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 767.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 766.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 745.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 745.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 744.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 727.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 723.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 710.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 705.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 682.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 657.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 646.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 641.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 613.8
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 612.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 607.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 585.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 573.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 557.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 549.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 544.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 539.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 526.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 517.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 509.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 505.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 504.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 495.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 492.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 460.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 449.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 422.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 421.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 410.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 409.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 391.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 390.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 389.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 380.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 378.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 375.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 365.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 357.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 351.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 342.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 340.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 336.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 335.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 326.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 278.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 273.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 260.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 233.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 224.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 203.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 194.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 193.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 177.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 157.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 148.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 133.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 121.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 16.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1015.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1015.4
FF:10164-103B2 76 years, female 1015.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1359.5
Pig sample Sample description nTPM
Caudate
nTPM: 1359.5
Samples: 4

Max nTPM: 2029.9
Min nTPM: 688.6
Sample A Female 688.6
Sample B Female 1313.0
Sample C Male 2029.9
Sample D Male 1406.3

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