We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
UCHL1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • UCHL1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:306.5 nTPM
FANTOM5:746.9 Scaled Tags Per Million
Pig:634.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA005993Antibody CAB002580
Glial cells LowNot detected
Neuronal cells -High




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 306.5
Samples: 246

Max nTPM: 1140.4
Min nTPM: 16.9
Std nTPM: 232.2
Median nTPM: 259.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1140.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 886.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 857.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 843.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 839.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 818.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 795.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 788.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 782.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 758.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 726.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 719.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 718.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 715.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 710.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 709.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 698.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 698.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 693.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 691.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 690.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 685.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 682.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 677.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 674.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 667.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 666.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 649.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 649.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 648.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 646.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 641.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 627.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 609.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 605.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 594.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 593.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 593.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 588.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 588.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 579.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 575.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 538.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 536.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 535.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 533.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 532.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 531.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 529.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 526.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 512.2
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 511.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 502.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 498.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 493.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 480.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 466.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 452.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 451.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 451.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 447.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 439.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 437.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 436.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 436.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 431.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 427.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 422.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 421.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 419.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 419.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 416.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 413.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 409.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 405.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 404.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 404.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 404.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 404.1
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 398.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 394.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 393.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 393.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 387.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 387.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 385.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 384.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 380.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 368.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 367.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 366.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 366.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 363.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 363.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 351.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 351.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 350.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 341.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 338.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 338.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 334.8
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 334.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 334.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 329.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 324.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 323.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 321.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 311.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 310.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 304.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 303.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 300.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 298.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 292.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 290.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 289.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 287.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 283.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 272.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 272.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 270.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 269.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 260.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 257.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 256.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 255.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 254.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 253.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 252.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 242.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 242.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 241.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 235.2
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 233.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 224.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 222.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 219.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 216.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 210.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 209.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 206.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 206.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 202.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 202.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 194.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 190.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 189.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 179.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 178.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 177.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 175.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 166.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 165.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 165.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 164.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 161.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 159.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 158.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 151.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 150.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 149.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 146.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 142.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 137.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 136.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 131.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 127.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 121.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 119.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 119.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 118.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 117.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 114.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 113.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 113.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 111.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 110.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 107.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 107.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 105.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 105.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 104.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 103.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 102.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 101.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 100.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 100.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 97.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 94.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 94.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 92.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 90.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 89.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 89.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 86.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 85.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 85.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 83.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 83.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 82.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 79.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 78.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 77.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 73.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 72.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 70.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 70.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 69.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 68.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 67.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 65.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 59.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 59.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 59.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 58.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 56.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 53.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 52.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 49.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 48.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 48.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 47.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 46.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 45.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 42.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 42.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 41.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 41.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 40.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 40.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 39.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 39.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 38.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 37.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 34.9
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 33.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 33.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 29.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 28.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 26.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 23.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 23.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 21.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 17.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 17.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 16.9
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

746.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 746.9
FF:10164-103B2 76 years, female 746.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

634.1
Pig sample Sample description nTPM
Caudate
nTPM: 634.1
Samples: 4

Max nTPM: 724.7
Min nTPM: 563.5
Sample A Female 563.5
Sample B Female 652.8
Sample C Male 724.7
Sample D Male 595.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org