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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:161.4 nTPM
GTEx:161.4 nTPM
FANTOM5:535.0 Scaled Tags Per Million
Pig:66.0 nTPM
Mouse:24.1 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

161.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 161.4
Samples: 105

Max nTPM: 264.1
Min nTPM: 105.8
Std nTPM: 29.6
Median nTPM:
491_1 89 years, female 264.1
495_1 57 years, female 248.0
117_1 61 years, male 241.4
311_1 78 years, male 226.8
315_1 62 years, female 220.0
490_1 67 years, female 216.9
322_1 76 years, male 213.8
137_1 83 years, male 209.4
415_1 77 years, female 204.3
149_1 88 years, male 200.4
89_1 63 years, male 197.9
35_1 74 years, female 195.3
348_1 84 years, male 194.5
286_1 68 years, female 192.7
6_1 73 years, female 191.6
142_1 61 years, female 191.0
501_1 88 years, male 191.0
466_1 57 years, female 190.5
447_1 81 years, male 188.3
313_1 79 years, female 184.4
499_1 55 years, female 182.7
119_1 70 years, female 181.9
162_1 79 years, female 181.4
32_1 67 years, male 180.2
139_1 64 years, female 179.6
350_1 84 years, female 178.4
81_1 67 years, male 177.6
324_1 76 years, male 174.6
172_1 72 years, female 174.2
307_1 66 years, female 174.0
468_1 89 years, male 173.0
347_1 72 years, male 172.9
266_1 85 years, male 172.4
145_1 84 years, male 172.1
126_1 63 years, male 170.8
120_1 70 years, female 169.7
396_1 62 years, male 168.9
43_1 64 years, female 168.4
308_1 70 years, female 168.2
115_1 83 years, male 166.7
386_1 76 years, male 166.5
229_1 69 years, female 166.0
414_1 84 years, female 163.7
405_1 91 years, male 163.6
351_1 91 years, male 163.0
526_1 61 years, male 162.2
177_1 74 years, male 161.4
518_1 75 years, female 159.0
2_1 77 years, female 158.9
353_1 82 years, female 158.1
317_1 60 years, male 157.1
246_1 77 years, male 156.8
265_1 87 years, male 156.6
42_1 85 years, male 155.5
335_1 73 years, female 154.9
503_1 68 years, male 154.8
413_1 59 years, female 154.3
237_1 82 years, male 153.9
18_1 88 years, male 153.1
17_1 71 years, male 152.5
153_1 70 years, female 152.4
264_1 73 years, female 152.1
189_1 76 years, male 151.2
99_1 64 years, male 150.9
243_1 75 years, male 150.7
4_1 88 years, female 150.6
217_1 76 years, male 150.2
173_1 67 years, male 149.9
9_1 66 years, female 149.3
318_1 68 years, male 146.4
109_1 81 years, female 145.0
389_1 86 years, female 144.7
355_1 70 years, female 143.5
375_1 74 years, female 142.3
379_1 60 years, male 142.0
163_1 78 years, male 141.8
356_1 87 years, female 141.2
292_1 71 years, male 141.0
319_1 81 years, male 140.8
480_1 63 years, male 140.2
218_1 71 years, female 139.9
314_1 67 years, male 138.1
251_1 78 years, male 137.9
288_1 66 years, female 137.1
376_1 75 years, female 136.7
254_1 77 years, female 136.5
506_1 65 years, male 136.5
316_1 62 years, male 133.4
320_1 89 years, female 132.5
354_1 81 years, female 132.1
349_1 83 years, male 132.0
384_1 83 years, male 129.0
425_1 59 years, female 129.0
293_1 68 years, female 126.6
452_1 88 years, female 125.9
406_1 79 years, male 125.7
517_1 88 years, male 125.4
41_1 94 years, female 123.4
291_1 76 years, male 123.3
352_1 62 years, male 121.8
377_1 82 years, female 120.1
295_1 61 years, female 118.6
394_1 75 years, female 114.3
404_1 82 years, female 114.1
321_1 62 years, female 105.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

535.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 535.0
FF:10030-101E3 24-65 years, mixed 535.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.0
Pig sample Sample description nTPM
Retina
nTPM: 66.0
Samples: 4

Max nTPM: 69.4
Min nTPM: 61.1
Sample A Female 61.1
Sample B Female 65.2
Sample C Male 69.4
Sample D Male 68.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.1
Mouse sample Sample description nTPM
Retina
nTPM: 24.1
Samples: 4

Max nTPM: 27.7
Min nTPM: 22.0
Sample A Male 24.4
Sample B Male 22.0
Sample C Female 22.4
Sample D Female 27.7

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