MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:54.4 nTPM
GTEx:9.5 nTPM
FANTOM5:149.6 Scaled Tags Per Million
Pig:47.4 nTPM
Mouse:34.1 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.3
1870 Female, age 42, unknown 62.2
1830 Male, age 51, unknown 45.3
1833 Male, age 53, unknown 45.3
2411 Female, age 72, unknown 43.0
1827 Male, age 72, unknown 41.4
2586 Male, age 75, left hemisphere 36.1
2219 Male, age 76, both hemispheres 32.3
2666 Male, age 74, left hemisphere 29.8
2828 Female, age 72, unknown 29.6
2019 Male, age 18, unknown 18.2
Dorsal raphe nucleus
nTPM: 43.6
2016 Female, age 72, unknown 46.7
2750 Male, age 76, both hemispheres 44.9
2047 Male, age 72, unknown 43.1
2298 Female, age 72, unknown 42.0
1828 Male, age 53, unknown 41.2
Inferior colliculus
nTPM: 54.4
2849 Male, age 72, unknown 64.9
2097 Female, age 72, unknown 56.2
1848 Female, age 42, unknown 51.3
1890 Male, age 53, unknown 45.4
Median raphe nucleus
nTPM: 35.7
2220 Male, age 76, midline 35.7
Periaquaductal grey, anterior
nTPM: 45.9
1947 Male, age 18, unknown 57.0
2502 Female, age 75, unknown 40.7
1795 Male, age 51, unknown 39.9
Periaquaductal grey, dorsal
nTPM: 46.8
1840 Male, age 53, unknown 57.6
2850 Male, age 76, both hemispheres 44.7
1831 Male, age 72, unknown 43.6
2464 Female, age 72, unknown 41.5
Periaquaductal grey, lateral
nTPM: 48.9
2053 Male, age 18, unknown 63.0
2272 Male, age 74, both hemispheres 44.8
2140 Male, age 76, both hemispheres 38.9
Pretectal area
nTPM: 35.2
2825 Male, age 18, unknown 63.8
2224 Female, age 72, unknown 49.9
2316 Male, age 76, right hemisphere 47.6
2273 Male, age 74, both hemispheres 40.7
2407 Male, age 75, both hemispheres 37.1
2667 Female, age 75, unknown 37.1
1817 Female, age 42, unknown 25.8
1815 Male, age 53, unknown 25.4
1944 Female, age 72, unknown 21.1
1816 Male, age 51, unknown 20.2
2007 Male, age 72, unknown 18.1
Red nucleus
nTPM: 35.0
1865 Male, age 51, unknown 40.8
1821 Female, age 72, unknown 40.6
2503 Female, age 72, unknown 37.9
2769 Male, age 72, unknown 37.2
2227 Male, age 72, unknown 36.7
1954 Female, age 42, unknown 36.6
2725 Female, age 75, unknown 36.6
2588 Male, age 74, left hemisphere 33.9
1904 Male, age 53, unknown 33.4
2823 Male, age 76, right hemisphere 33.3
2584 Male, age 75, left hemisphere 31.9
2785 Male, age 18, unknown 21.2
Substantia nigra
nTPM: 30.6
2241 Male, age 72, unknown 40.5
2583 Male, age 75, right hemisphere 32.2
2699 Male, age 18, unknown 31.7
1889 Female, age 72, unknown 31.4
2409 Female, age 72, unknown 30.8
1851 Male, age 51, unknown 30.2
2590 Female, age 75, unknown 28.9
1941 Male, age 53, unknown 28.4
1916 Female, age 42, unknown 25.9
2665 Male, age 74, both hemispheres 25.9
Superior colliculus
nTPM: 38.7
1839 Male, age 51, unknown 51.5
1895 Male, age 76, right hemisphere 51.3
2587 Male, age 74, left hemisphere 42.5
1913 Female, age 42, unknown 39.6
1796 Male, age 53, unknown 38.0
2668 Female, age 75, unknown 36.7
2261 Male, age 18, unknown 35.8
1995 Male, age 72, unknown 35.2
2664 Male, age 75, both hemispheres 34.4
2087 Female, age 72, unknown 21.8
Ventral tegmental area
nTPM: 38.9
2223 Female, age 72, unknown 57.6
2021 Male, age 53, unknown 43.7
1942 Male, age 51, unknown 34.8
2410 Female, age 72, unknown 34.3
1915 Female, age 42, unknown 34.1
2218 Male, age 76, both hemispheres 28.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 19.4
Min nTPM: 4.3
Std nTPM: 2.8
Median nTPM: 9.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 19.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 17.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 16.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 16.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 16.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 15.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 15.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 15.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 14.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 149.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 149.6
FF:10158-103A5 76 years, female 149.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 47.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.6
Samples: 4

Max nTPM: 38.2
Min nTPM: 24.3
Sample A Female 37.4
Sample B Female 24.3
Sample C Male 30.5
Sample D Male 38.2
Midbrain
nTPM: 47.4
Samples: 4

Max nTPM: 54.9
Min nTPM: 39.5
Sample A Female 39.5
Sample B Female 45.8
Sample C Male 49.4
Sample D Male 54.9
Periaqueductal gray
nTPM: 41.4
Samples: 3

Max nTPM: 43.1
Min nTPM: 40.2
Sample B Female 43.1
Sample C Male 40.2
Sample D Male 40.8
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 59.8
Min nTPM: 20.9
Sample A Female 42.1
Sample B Female 20.9
Sample C Male 48.7
Sample D Male 59.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 34.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 37.6
Min nTPM: 29.2
Sample A Male 29.2
Sample B Male 35.2
Sample C Female 37.6
Sample D Female 34.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
682 Antisense, RP_Baylor_102923, Mouse strain C57BL/6J (56 days, male) 9.1
683 Antisense, RP_Baylor_102923, Mouse strain C57BL/6J (56 days, male) 8.8

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