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PDE1C
HPA
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  • PDE1C
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PDE1C
Synonyms Hcam3
Gene descriptioni

Full gene name according to HGNC.

Phosphodiesterase 1C
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Disease related genes
Enzymes
Human disease related genes
Metabolic proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 7
Cytoband p14.3
Chromosome location (bp) 31751179 - 32428131
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000154678 (version 109)
Entrez gene 5137
HGNC HGNC:8776
UniProt Q14123 (UniProt - Evidence at protein level)
neXtProt NX_Q14123
GeneCards PDE1C
Antibodypedia PDE1C antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Calmodulin-dependent cyclic nucleotide phosphodiesterase with a dual specificity for the second messengers cAMP and cGMP, which are key regulators of many important physiological processes 1, 2. Has a high affinity for both cAMP and cGMP 3. Modulates the amplitude and duration of the cAMP signal in sensory cilia in response to odorant stimulation, hence contributing to the generation of action potentials. Regulates smooth muscle cell proliferation. Regulates the stability of growth factor receptors, including PDGFRB (Probable).... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Calmodulin-binding, Hydrolase
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

cAMP, cGMP, Magnesium, Metal-binding, Zinc
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes an enzyme that belongs to the 3'5'-cyclic nucleotide phosphodiesterase family. Members of this family catalyze hydrolysis of the cyclic nucleotides, cyclic adenosine monophosphate and cyclic guanosine monophosphate, to the corresponding nucleoside 5'-monophosphates. The enzyme encoded by this gene regulates proliferation and migration of vascular smooth muscle cells, and neointimal hyperplasia. This enzyme also plays a role in pathological vascular remodeling by regulating the stability of growth factor receptors, such as PDGF-receptor-beta. [provided by RefSeq, Jul 2016]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PDE1C-201
ENSP00000318105
ENST00000321453
Q14123
[Direct mapping] Dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004114 [3',5'-cyclic-nucleotide phosphodiesterase activity]
GO:0004115 [3',5'-cyclic-AMP phosphodiesterase activity]
GO:0004117 [calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity]
GO:0005516 [calmodulin binding]
GO:0005764 [lysosome]
GO:0005829 [cytosol]
GO:0007165 [signal transduction]
GO:0008081 [phosphoric diester hydrolase activity]
GO:0016787 [hydrolase activity]
GO:0043025 [neuronal cell body]
GO:0046872 [metal ion binding]
GO:0047555 [3',5'-cyclic-GMP phosphodiesterase activity]
GO:0048101 [calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity]
Show all
709 aa
80.8 kDa
No 0
PDE1C-202
ENSP00000379485
ENST00000396182
Q14123
[Direct mapping] Dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004114 [3',5'-cyclic-nucleotide phosphodiesterase activity]
GO:0004115 [3',5'-cyclic-AMP phosphodiesterase activity]
GO:0004117 [calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity]
GO:0005516 [calmodulin binding]
GO:0005764 [lysosome]
GO:0005829 [cytosol]
GO:0007165 [signal transduction]
GO:0008081 [phosphoric diester hydrolase activity]
GO:0016787 [hydrolase activity]
GO:0043025 [neuronal cell body]
GO:0046872 [metal ion binding]
GO:0047555 [3',5'-cyclic-GMP phosphodiesterase activity]
GO:0048101 [calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity]
Show all
634 aa
72.2 kDa
No 0
PDE1C-203
ENSP00000379487
ENST00000396184
Q14123
[Direct mapping] Dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004114 [3',5'-cyclic-nucleotide phosphodiesterase activity]
GO:0004115 [3',5'-cyclic-AMP phosphodiesterase activity]
GO:0004117 [calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity]
GO:0005516 [calmodulin binding]
GO:0005764 [lysosome]
GO:0005829 [cytosol]
GO:0007165 [signal transduction]
GO:0008081 [phosphoric diester hydrolase activity]
GO:0016787 [hydrolase activity]
GO:0043025 [neuronal cell body]
GO:0046872 [metal ion binding]
GO:0047555 [3',5'-cyclic-GMP phosphodiesterase activity]
GO:0048101 [calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity]
Show all
634 aa
72.2 kDa
No 0
PDE1C-204
ENSP00000379492
ENST00000396189
F8W905
[Direct mapping] Dual-specificity Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
46 aa
5.7 kDa
No 0
PDE1C-205
ENSP00000379494
ENST00000396191
Q14123
[Direct mapping] Dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Disease related genes
Human disease related genes
   Nervous system diseases
   Ear disease
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004114 [3',5'-cyclic-nucleotide phosphodiesterase activity]
GO:0004115 [3',5'-cyclic-AMP phosphodiesterase activity]
GO:0004117 [calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity]
GO:0005516 [calmodulin binding]
GO:0005764 [lysosome]
GO:0005829 [cytosol]
GO:0007165 [signal transduction]
GO:0008081 [phosphoric diester hydrolase activity]
GO:0016787 [hydrolase activity]
GO:0043025 [neuronal cell body]
GO:0046872 [metal ion binding]
GO:0047555 [3',5'-cyclic-GMP phosphodiesterase activity]
GO:0048101 [calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity]
Show all
709 aa
80.8 kDa
No 0
PDE1C-206
ENSP00000379496
ENST00000396193
A0A0A0MS69
[Direct mapping] Phosphodiesterase
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004114 [3',5'-cyclic-nucleotide phosphodiesterase activity]
GO:0004115 [3',5'-cyclic-AMP phosphodiesterase activity]
GO:0007165 [signal transduction]
GO:0008081 [phosphoric diester hydrolase activity]
GO:0016787 [hydrolase activity]
GO:0046872 [metal ion binding]
GO:0047555 [3',5'-cyclic-GMP phosphodiesterase activity]
Show all
769 aa
86.9 kDa
No 0
PDE1C-212
ENSP00000499831
ENST00000672256
A0A5F9ZGW6
[Direct mapping] Dual-specificity Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Nervous system diseases
   Ear disease
Protein evidence (Ezkurdia et al 2014)
Show all
120 aa
12.7 kDa
No 0

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