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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:207.7 nTPM
FANTOM5:262.5 Scaled Tags Per Million
Pig:36.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031069
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 207.7
Samples: 246

Max nTPM: 520.2
Min nTPM: 113.3
Std nTPM: 60.5
Median nTPM: 194.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 520.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 493.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 486.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 464.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 416.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 386.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 364.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 358.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 356.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 345.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 335.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 326.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 321.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 315.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 306.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 306.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 299.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 291.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 289.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 282.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 282.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 280.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 273.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 271.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 268.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 268.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 267.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 267.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 265.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 265.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 264.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 261.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 260.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 255.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 252.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 252.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 248.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 248.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 247.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 247.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 247.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 246.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 245.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 245.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 244.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 240.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 240.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 239.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 239.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 238.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 236.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 233.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 232.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 232.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 232.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 231.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 231.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 230.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 229.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 227.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 225.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 223.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 223.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 223.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 221.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 221.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 221.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 220.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 220.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 219.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 219.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 218.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 218.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 218.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 217.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 216.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 215.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 215.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 214.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 213.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 213.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 212.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 211.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 210.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 210.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 210.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 208.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 208.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 208.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 206.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 206.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 206.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 206.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 206.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 205.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 205.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 204.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 204.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 204.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 203.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 203.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 202.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 202.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 200.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 199.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 199.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 199.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 199.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 199.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 198.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 198.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 198.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 197.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 197.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 195.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 195.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 195.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 195.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 194.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 194.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 194.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 194.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 194.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 193.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 193.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 192.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 192.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 192.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 191.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 190.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 190.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 190.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 190.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 189.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 189.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 188.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 188.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 187.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 187.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 187.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 187.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 187.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 186.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 186.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 186.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 186.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 186.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 186.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 185.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 185.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 185.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 185.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 184.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 184.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 184.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 184.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 184.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 183.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 182.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 181.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 181.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 180.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 180.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 180.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 180.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 179.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 178.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 178.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 177.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 177.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 176.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 176.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 174.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 174.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 174.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 173.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 173.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 173.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 173.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 173.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 172.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 172.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 172.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 172.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 172.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 171.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 170.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 170.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 170.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 170.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 169.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 169.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 168.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 168.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 167.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 167.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 167.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 167.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 167.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 166.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 166.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 165.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 165.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 164.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 164.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 164.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 164.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 163.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 162.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 162.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 162.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 162.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 159.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 157.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 156.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 156.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 156.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 156.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 156.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 156.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 155.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 154.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 154.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 153.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 152.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 151.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 147.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 146.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 145.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 142.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 142.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 141.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 140.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 139.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 137.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 137.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 136.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 134.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 134.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 133.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 130.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 130.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 129.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 126.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 124.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 113.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

262.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 262.5
FF:10164-103B2 76 years, female 262.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.3
Pig sample Sample description nTPM
Caudate
nTPM: 36.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 29.8
Sample A Female 36.3
Sample B Female 39.9
Sample C Male 39.3
Sample D Male 29.8

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