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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:243.3 nTPM
HPA:243.3 nTPM
GTEx:163.9 nTPM
FANTOM5:575.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA031069
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.3
overview
Male, age 65
Small intestine sample 232
nTPM: 258.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 234.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 224.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 255.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 163.9
Samples: 187

Max nTPM: 564.9
Min nTPM: 55.4
Std nTPM: 62.1
Median nTPM: 155.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 564.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 324.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 286.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 278.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 266.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 266.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 265.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 260.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 257.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 255.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 253.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 253.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 251.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 250.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 247.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 246.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 246.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 245.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 245.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 244.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 244.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 243.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 241.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 237.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 236.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 235.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 232.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 231.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 228.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 228.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 226.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 226.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 224.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 220.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 220.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 219.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 215.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 215.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 213.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 211.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 207.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 206.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 205.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 205.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 205.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 204.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 203.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 203.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 202.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 201.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 200.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 200.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 198.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 198.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 195.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 195.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 193.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 191.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 188.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 185.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 182.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 182.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 180.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 179.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 178.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 178.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 177.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 177.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 176.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 175.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 174.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 173.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 173.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 173.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 173.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 173.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 172.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 172.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 171.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 171.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 170.9
GTEX-1192X-2526-SM-59868 50-59 years, male 169.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 169.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 168.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 168.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 168.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 163.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 163.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 162.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 162.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 160.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 157.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 156.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 155.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 155.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 155.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 154.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 154.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 154.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 152.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 150.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 149.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 148.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 148.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 145.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 144.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 142.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 142.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 141.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 140.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 140.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 140.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 140.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 139.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 139.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 138.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 136.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 135.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 134.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 134.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 134.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 133.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 132.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 129.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 129.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 128.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 128.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 127.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 126.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 124.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 124.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 124.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 124.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 124.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 123.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 120.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 120.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 119.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 118.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 118.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 118.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 117.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 115.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 115.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 115.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 114.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 114.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 113.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 111.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 109.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 108.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 108.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 107.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 104.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 103.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 103.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 103.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 103.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 101.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 98.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 98.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 97.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 97.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 96.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 94.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 94.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 92.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 91.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 91.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 90.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 90.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 89.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 89.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 88.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 87.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 86.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 85.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 83.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 83.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 83.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 79.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 78.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 77.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 75.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 73.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 72.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 55.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

575.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 575.0
FF:10024-101D6 15,40,85 years, mixed 575.0

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