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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:194.8 nTPM
HPA Brain:209.2 nTPM
GTEx:194.8 nTPM
FANTOM5:179.0 Scaled Tags Per Million
Pig:78.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 154.5
2565 Male, age 75, midline 181.5
2048 Male, age 55, midline 167.2
1981 Female, age 72, midline 148.7
2816 Male, age 47, midline 141.3
2194 Female, age 79, both hemispheres 133.6
Cervical spinal cord, dorsal horn
nTPM: 131.3
2173 Female, age 72, unknown 176.1
2296 Male, age 66, both hemispheres 155.8
1877 Male, age 55, unknown 133.2
2069 Male, age 47, both hemispheres 130.0
2721 Male, age 90, both hemispheres 98.0
2297 Male, age 75, both hemispheres 94.6
Cervical spinal cord, ventral horn
nTPM: 209.2
2480 Male, age 75, both hemispheres 308.0
2809 Male, age 90, both hemispheres 248.9
2295 Male, age 66, both hemispheres 211.0
2098 Female, age 72, unknown 171.6
2820 Female, age 79, both hemispheres 161.1
2068 Male, age 55, unknown 154.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 194.8
Samples: 159

Max nTPM: 501.8
Min nTPM: 73.4
Std nTPM: 75.6
Median nTPM: 186.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 501.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 476.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 404.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 403.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 391.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 376.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 374.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 340.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 334.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 330.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 322.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 320.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 315.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 312.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 294.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 294.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 275.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 275.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 272.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 271.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 269.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 268.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 267.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 264.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 253.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 250.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 250.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 248.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 243.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 243.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 242.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 238.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 237.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 236.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 234.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 234.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 234.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 233.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 233.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 232.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 232.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 229.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 227.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 226.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 224.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 222.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 221.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 220.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 220.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 219.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 216.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 213.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 212.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 211.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 211.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 211.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 208.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 207.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 207.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 206.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 204.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 203.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 202.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 200.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 199.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 198.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 197.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 196.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 196.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 196.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 196.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 193.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 192.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 192.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 190.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 190.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 189.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 188.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 188.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 186.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 185.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 185.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 185.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 184.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 182.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 181.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 179.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 174.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 173.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 171.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 170.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 170.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 170.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 169.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 168.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 167.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 159.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 158.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 158.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 158.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 154.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 153.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 151.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 151.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 151.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 148.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 147.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 147.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 147.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 147.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 147.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 144.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 143.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 142.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 140.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 140.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 139.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 138.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 137.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 137.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 136.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 136.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 136.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 135.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 135.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 135.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 134.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 133.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 133.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 131.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 129.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 128.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 125.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 125.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 124.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 124.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 124.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 124.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 123.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 121.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 121.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 119.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 117.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 114.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 110.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 109.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 109.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 102.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 102.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 101.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 100.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 98.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 89.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 86.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 83.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 82.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 81.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 73.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

179.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 179.0
FF:10159-103A6 76 years, female 212.9
FF:10181-103D1 60 years, female 145.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 66.4
Samples: 4

Max nTPM: 67.2
Min nTPM: 65.5
Sample A Female 65.8
Sample B Female 67.2
Sample C Male 65.5
Sample D Male 67.2
Ventral spinal cord
nTPM: 78.1
Samples: 4

Max nTPM: 88.4
Min nTPM: 68.1
Sample A Female 83.0
Sample B Female 72.7
Sample C Male 68.1
Sample D Male 88.4

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