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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:244.0 nTPM
GTEx:244.0 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:166.6 nTPM
Mouse:428.7 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 244.0
Samples: 105

Max nTPM: 386.4
Min nTPM: 108.4
Std nTPM: 53.3
Median nTPM:
6_1 73 years, female 386.4
319_1 81 years, male 380.7
352_1 62 years, male 375.2
375_1 74 years, female 339.3
316_1 62 years, male 335.0
126_1 63 years, male 316.4
354_1 81 years, female 315.3
35_1 74 years, female 313.6
237_1 82 years, male 313.3
386_1 76 years, male 302.3
217_1 76 years, male 302.1
243_1 75 years, male 301.9
229_1 69 years, female 301.8
389_1 86 years, female 301.0
405_1 91 years, male 300.2
425_1 59 years, female 298.5
246_1 77 years, male 296.9
153_1 70 years, female 296.7
468_1 89 years, male 296.7
115_1 83 years, male 288.0
396_1 62 years, male 287.4
347_1 72 years, male 287.1
218_1 71 years, female 287.0
377_1 82 years, female 285.7
163_1 78 years, male 285.0
162_1 79 years, female 283.2
379_1 60 years, male 279.8
355_1 70 years, female 278.7
172_1 72 years, female 277.0
480_1 63 years, male 276.7
142_1 61 years, female 270.4
406_1 79 years, male 270.4
415_1 77 years, female 269.7
99_1 64 years, male 268.2
189_1 76 years, male 268.2
321_1 62 years, female 267.4
9_1 66 years, female 265.8
17_1 71 years, male 264.0
526_1 61 years, male 263.3
18_1 88 years, male 259.2
177_1 74 years, male 256.7
286_1 68 years, female 256.5
335_1 73 years, female 256.5
137_1 83 years, male 256.0
518_1 75 years, female 255.8
320_1 89 years, female 255.7
32_1 67 years, male 255.1
503_1 68 years, male 252.9
349_1 83 years, male 251.6
350_1 84 years, female 250.9
404_1 82 years, female 250.8
394_1 75 years, female 250.4
376_1 75 years, female 249.1
414_1 84 years, female 247.6
318_1 68 years, male 246.9
4_1 88 years, female 246.3
384_1 83 years, male 244.1
447_1 81 years, male 243.5
42_1 85 years, male 243.3
490_1 67 years, female 239.1
81_1 67 years, male 236.9
265_1 87 years, male 236.8
356_1 87 years, female 235.4
2_1 77 years, female 233.5
145_1 84 years, male 232.4
322_1 76 years, male 230.9
466_1 57 years, female 229.2
117_1 61 years, male 226.5
43_1 64 years, female 224.8
348_1 84 years, male 224.6
324_1 76 years, male 224.2
251_1 78 years, male 223.4
266_1 85 years, male 221.5
517_1 88 years, male 220.1
292_1 71 years, male 217.8
254_1 77 years, female 216.6
291_1 76 years, male 212.9
351_1 91 years, male 208.0
315_1 62 years, female 201.8
139_1 64 years, female 200.8
353_1 82 years, female 199.4
120_1 70 years, female 194.2
109_1 81 years, female 188.4
307_1 66 years, female 187.6
499_1 55 years, female 187.6
173_1 67 years, male 187.2
293_1 68 years, female 186.7
413_1 59 years, female 182.4
506_1 65 years, male 181.8
264_1 73 years, female 181.6
313_1 79 years, female 180.7
149_1 88 years, male 177.8
491_1 89 years, female 175.7
295_1 61 years, female 172.1
311_1 78 years, male 169.9
119_1 70 years, female 167.0
501_1 88 years, male 165.6
89_1 63 years, male 164.6
288_1 66 years, female 164.5
452_1 88 years, female 161.8
317_1 60 years, male 161.5
314_1 67 years, male 157.2
495_1 57 years, female 152.9
41_1 94 years, female 139.7
308_1 70 years, female 108.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 21.8
FF:10030-101E3 24-65 years, mixed 21.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.6
Pig sample Sample description nTPM
Retina
nTPM: 166.6
Samples: 4

Max nTPM: 203.0
Min nTPM: 142.5
Sample A Female 151.8
Sample B Female 203.0
Sample C Male 169.0
Sample D Male 142.5

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

428.7
Mouse sample Sample description nTPM
Retina
nTPM: 428.7
Samples: 4

Max nTPM: 441.0
Min nTPM: 415.8
Sample A Male 441.0
Sample B Male 431.4
Sample C Female 415.8
Sample D Female 426.7

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