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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:265.2 nTPM
FANTOM5:239.1 Scaled Tags Per Million
Pig:48.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051428
Glial cells High
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

265.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 265.2
Samples: 246

Max nTPM: 686.8
Min nTPM: 105.6
Std nTPM: 102.7
Median nTPM: 246.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 686.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 665.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 649.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 642.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 600.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 580.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 487.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 486.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 480.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 473.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 468.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 458.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 454.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 449.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 448.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 436.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 427.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 427.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 421.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 413.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 405.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 403.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 394.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 389.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 388.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 387.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 385.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 384.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 380.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 373.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 373.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 373.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 371.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 370.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 367.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 366.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 361.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 360.8
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 357.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 356.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 356.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 355.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 353.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 351.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 349.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 347.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 341.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 332.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 331.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 330.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 330.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 327.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 326.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 325.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 322.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 321.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 318.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 314.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 314.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 313.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 313.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 312.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 312.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 309.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 309.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 307.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 305.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 303.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 303.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 301.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 301.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 301.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 298.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 296.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 294.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 293.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 292.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 292.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 292.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 291.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 291.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 290.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 289.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 288.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 288.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 288.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 286.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 286.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 284.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 282.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 280.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 278.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 276.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 275.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 275.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 275.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 275.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 274.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 273.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 271.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 271.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 270.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 268.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 267.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 267.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 267.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 267.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 265.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 262.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 262.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 260.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 260.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 259.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 258.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 254.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 253.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 252.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 249.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 249.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 249.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 247.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 247.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 247.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 246.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 246.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 245.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 242.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 241.7
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 241.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 241.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 240.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 239.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 238.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 238.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 238.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 237.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 236.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 235.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 234.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 233.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 231.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 230.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 230.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 229.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 228.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 227.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 226.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 224.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 222.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 221.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 221.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 221.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 219.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 219.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 218.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 216.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 214.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 214.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 213.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 213.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 212.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 211.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 211.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 210.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 208.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 208.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 207.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 207.1
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 205.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 203.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 202.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 200.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 200.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 199.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 199.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 199.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 198.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 198.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 197.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 197.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 195.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 194.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 194.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 191.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 191.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 190.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 187.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 186.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 185.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 185.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 184.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 184.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 181.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 181.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 180.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 180.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 178.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 177.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 176.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 176.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 175.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 174.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 173.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 172.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 172.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 172.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 171.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 169.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 168.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 167.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 166.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 166.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 165.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 162.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 162.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 161.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 159.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 158.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 158.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 156.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 156.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 154.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 153.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 153.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 152.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 151.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 149.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 146.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 144.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 144.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 144.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 141.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 139.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 138.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 138.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 137.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 135.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 133.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 130.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 130.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 130.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 129.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 128.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 121.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 116.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 105.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

239.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 239.1
FF:10164-103B2 76 years, female 239.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.1
Pig sample Sample description nTPM
Caudate
nTPM: 48.1
Samples: 4

Max nTPM: 53.1
Min nTPM: 44.6
Sample A Female 47.6
Sample B Female 47.1
Sample C Male 53.1
Sample D Male 44.6

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