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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:259.6 nTPM
HPA:259.6 nTPM
GTEx:201.9 nTPM
FANTOM5:356.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA051428
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.6
overview
Male, age 65
Small intestine sample 232
nTPM: 283.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 295.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 214.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 244.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

201.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 201.9
Samples: 187

Max nTPM: 1253.0
Min nTPM: 61.3
Std nTPM: 120.3
Median nTPM: 175.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1253.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 458.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 421.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 404.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 402.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 391.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 388.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 388.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 380.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 366.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 363.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 362.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 358.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 355.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 351.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 349.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 347.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 343.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 332.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 330.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 330.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 328.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 324.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 321.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 319.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 311.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 309.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 309.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 306.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 303.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 300.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 298.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 297.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 294.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 292.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 289.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 287.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 286.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 285.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 284.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 284.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 278.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 278.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 275.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 274.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 273.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 272.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 270.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 270.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 267.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 267.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 263.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 261.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 259.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 258.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 257.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 254.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 252.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 243.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 240.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 238.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 238.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 236.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 236.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 230.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 227.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 227.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 227.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 225.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 222.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 217.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 215.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 213.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 213.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 203.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 199.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 195.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 195.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 194.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 193.9
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 193.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 192.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 192.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 188.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 186.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 185.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 184.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 181.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 180.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 178.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 178.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 178.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 176.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 175.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 172.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 171.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 171.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 171.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 170.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 169.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 169.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 166.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 161.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 160.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 159.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 159.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 157.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 156.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 152.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 152.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 152.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 151.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 148.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 145.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 144.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 144.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 143.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 142.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 142.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 138.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 137.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 134.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 134.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 132.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 131.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 128.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 125.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 125.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 125.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 124.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 123.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 123.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 122.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 122.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 121.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 121.5
GTEX-1192X-2526-SM-59868 50-59 years, male 121.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 120.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 120.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 119.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 119.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 118.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 116.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 116.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 115.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 114.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 114.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 112.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 111.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 109.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 107.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 107.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 106.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 104.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 104.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 103.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 103.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 103.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 102.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 102.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 100.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 99.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 99.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 99.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 98.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 97.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 96.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 96.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 95.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 94.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 89.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 89.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 89.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 88.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 86.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 86.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 84.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 81.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 80.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 79.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 76.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 70.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 70.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 65.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 64.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 64.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 61.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

356.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 356.1
FF:10024-101D6 15,40,85 years, mixed 356.1

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