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VSIG4
HPA
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  • VSIG4
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

VSIG4
Synonyms CRIg, Z39IG
Gene descriptioni

Full gene name according to HGNC.

V-set and immunoglobulin domain containing 4
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome X
Cytoband q12
Chromosome location (bp) 66021738 - 66040125
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000155659 (version 109)
Entrez gene 11326
HGNC HGNC:17032
UniProt Q9Y279 (UniProt - Evidence at protein level)
neXtProt NX_Q9Y279
GeneCards VSIG4
Antibodypedia VSIG4 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Phagocytic receptor, strong negative regulator of T-cell proliferation and IL2 production. Potent inhibitor of the alternative complement pathway convertases.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Complement alternate pathway, Immunity, Innate immunity
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a v-set and immunoglobulin-domain containing protein that is structurally related to the B7 family of immune regulatory proteins. The encoded protein may be a negative regulator of T-cell responses. This protein is also a receptor for the complement component 3 fragments C3b and iC3b. Alternate splicing results in multiple transcript variants. [provided by RefSeq, May 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
VSIG4-201
ENSP00000363869
ENST00000374737
Q9Y279
[Direct mapping] V-set and immunoglobulin domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001851 [complement component C3b binding]
GO:0002376 [immune system process]
GO:0005515 [protein binding]
GO:0006957 [complement activation, alternative pathway]
GO:0016020 [membrane]
GO:0032703 [negative regulation of interleukin-2 production]
GO:0032991 [protein-containing complex]
GO:0042130 [negative regulation of T cell proliferation]
GO:0043031 [negative regulation of macrophage activation]
GO:0045087 [innate immune response]
GO:0045957 [negative regulation of complement activation, alternative pathway]
Show all
399 aa
44 kDa
Yes 1
VSIG4-202
ENSP00000394143
ENST00000412866
Q9Y279
[Direct mapping] V-set and immunoglobulin domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001851 [complement component C3b binding]
GO:0002376 [immune system process]
GO:0005515 [protein binding]
GO:0006957 [complement activation, alternative pathway]
GO:0016020 [membrane]
GO:0032703 [negative regulation of interleukin-2 production]
GO:0032991 [protein-containing complex]
GO:0042130 [negative regulation of T cell proliferation]
GO:0043031 [negative regulation of macrophage activation]
GO:0045087 [innate immune response]
GO:0045957 [negative regulation of complement activation, alternative pathway]
Show all
305 aa
33.9 kDa
Yes 1
VSIG4-203
ENSP00000393108
ENST00000427538
H7C062
[Direct mapping] V-set and immunoglobulin domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0016020 [membrane]
GO:0032703 [negative regulation of interleukin-2 production]
GO:0042130 [negative regulation of T cell proliferation]
GO:0043031 [negative regulation of macrophage activation]
Show all
274 aa
30.1 kDa
No 1
VSIG4-204
ENSP00000411581
ENST00000455586
Q9Y279
[Direct mapping] V-set and immunoglobulin domain-containing protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0001851 [complement component C3b binding]
GO:0002376 [immune system process]
GO:0005515 [protein binding]
GO:0006957 [complement activation, alternative pathway]
GO:0016020 [membrane]
GO:0032703 [negative regulation of interleukin-2 production]
GO:0032991 [protein-containing complex]
GO:0042130 [negative regulation of T cell proliferation]
GO:0043031 [negative regulation of macrophage activation]
GO:0045087 [innate immune response]
GO:0045957 [negative regulation of complement activation, alternative pathway]
Show all
321 aa
35.5 kDa
Yes 1

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