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PPARGC1B
HPA
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  • PPARGC1B
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

PPARGC1B
Synonyms PERC, PGC1B, PPARAGCIbeta
Gene descriptioni

Full gene name according to HGNC.

PPARG coactivator 1 beta
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Human disease related genes
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 5
Cytoband q32
Chromosome location (bp) 149730298 - 149855022
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000155846 (version 109)
Entrez gene 133522
HGNC HGNC:30022
UniProt Q86YN6 (UniProt - Evidence at protein level)
neXtProt NX_Q86YN6
GeneCards PPARGC1B
Antibodypedia PPARGC1B antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Plays a role of stimulator of transcription factors and nuclear receptors activities. Activates transcriptional activity of estrogen receptor alpha, nuclear respiratory factor 1 (NRF1) and glucocorticoid receptor in the presence of glucocorticoids. May play a role in constitutive non-adrenergic-mediated mitochondrial biogenesis as suggested by increased basal oxygen consumption and mitochondrial number when overexpressed. May be involved in fat oxidation and non-oxidative glucose metabolism and in the regulation of energy expenditure. Induces the expression of PERM1 in the skeletal muscle in an ESRRA-dependent manner.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Activator, RNA-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Transcription, Transcription regulation
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene stimulates the activity of several transcription factors and nuclear receptors, including estrogen receptor alpha, nuclear respiratory factor 1, and glucocorticoid receptor. The encoded protein may be involved in fat oxidation, non-oxidative glucose metabolism, and the regulation of energy expenditure. This protein is downregulated in prediabetic and type 2 diabetes mellitus patients. Certain allelic variations in this gene increase the risk of the development of obesity. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2010]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
PPARGC1B-201
ENSP00000312649
ENST00000309241
Q86YN6
[Direct mapping] Peroxisome proliferator-activated receptor gamma coactivator 1-beta
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Endocrine and metabolic diseases
   Other endocrine and metabolic diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0001503 [ossification]
GO:0003676 [nucleic acid binding]
GO:0003712 [transcription coregulator activity]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005829 [cytosol]
GO:0006355 [regulation of DNA-templated transcription]
GO:0006390 [mitochondrial transcription]
GO:0007015 [actin filament organization]
GO:0008134 [transcription factor binding]
GO:0010694 [positive regulation of alkaline phosphatase activity]
GO:0016592 [mediator complex]
GO:0030331 [nuclear estrogen receptor binding]
GO:0030374 [nuclear receptor coactivator activity]
GO:0030520 [intracellular estrogen receptor signaling pathway]
GO:0034614 [cellular response to reactive oxygen species]
GO:0042327 [positive regulation of phosphorylation]
GO:0045672 [positive regulation of osteoclast differentiation]
GO:0045780 [positive regulation of bone resorption]
GO:0045892 [negative regulation of DNA-templated transcription]
GO:0045893 [positive regulation of DNA-templated transcription]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0050682 [AF-2 domain binding]
GO:0051091 [positive regulation of DNA-binding transcription factor activity]
GO:0051384 [response to glucocorticoid]
GO:0051591 [response to cAMP]
GO:0060346 [bone trabecula formation]
GO:0120162 [positive regulation of cold-induced thermogenesis]
Show all
1023 aa
113.2 kDa
No 0
PPARGC1B-202
ENSP00000353638
ENST00000360453
Q86YN6
[Direct mapping] Peroxisome proliferator-activated receptor gamma coactivator 1-beta
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Endocrine and metabolic diseases
   Other endocrine and metabolic diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003676 [nucleic acid binding]
GO:0003712 [transcription coregulator activity]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005829 [cytosol]
GO:0006355 [regulation of DNA-templated transcription]
GO:0008134 [transcription factor binding]
GO:0016592 [mediator complex]
GO:0030331 [nuclear estrogen receptor binding]
GO:0030374 [nuclear receptor coactivator activity]
GO:0030520 [intracellular estrogen receptor signaling pathway]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0050682 [AF-2 domain binding]
GO:0051091 [positive regulation of DNA-binding transcription factor activity]
GO:0120162 [positive regulation of cold-induced thermogenesis]
Show all
984 aa
108.9 kDa
No 0
PPARGC1B-203
ENSP00000377855
ENST00000394320
Q86YN6
[Direct mapping] Peroxisome proliferator-activated receptor gamma coactivator 1-beta
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Endocrine and metabolic diseases
   Other endocrine and metabolic diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003676 [nucleic acid binding]
GO:0003712 [transcription coregulator activity]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005829 [cytosol]
GO:0006355 [regulation of DNA-templated transcription]
GO:0008134 [transcription factor binding]
GO:0016592 [mediator complex]
GO:0030331 [nuclear estrogen receptor binding]
GO:0030374 [nuclear receptor coactivator activity]
GO:0030520 [intracellular estrogen receptor signaling pathway]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0050682 [AF-2 domain binding]
GO:0051091 [positive regulation of DNA-binding transcription factor activity]
GO:0120162 [positive regulation of cold-induced thermogenesis]
Show all
1017 aa
112.6 kDa
No 0
PPARGC1B-204
ENSP00000384403
ENST00000403750
Q86YN6
[Direct mapping] Peroxisome proliferator-activated receptor gamma coactivator 1-beta
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Endocrine and metabolic diseases
   Other endocrine and metabolic diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Show all
GO:0003676 [nucleic acid binding]
GO:0003712 [transcription coregulator activity]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005739 [mitochondrion]
GO:0005829 [cytosol]
GO:0006355 [regulation of DNA-templated transcription]
GO:0008134 [transcription factor binding]
GO:0016592 [mediator complex]
GO:0030331 [nuclear estrogen receptor binding]
GO:0030374 [nuclear receptor coactivator activity]
GO:0030520 [intracellular estrogen receptor signaling pathway]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0050682 [AF-2 domain binding]
GO:0051091 [positive regulation of DNA-binding transcription factor activity]
GO:0120162 [positive regulation of cold-induced thermogenesis]
Show all
959 aa
106.2 kDa
No 0
PPARGC1B-205
ENSP00000409364
ENST00000434684
H0Y713
[Direct mapping] Peroxisome proliferator-activated receptor gamma coactivator 1-beta
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Endocrine and metabolic diseases
   Other endocrine and metabolic diseases
Show all
GO:0003676 [nucleic acid binding]
GO:0003712 [transcription coregulator activity]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005829 [cytosol]
GO:0006351 [DNA-templated transcription]
GO:0008134 [transcription factor binding]
GO:0030331 [nuclear estrogen receptor binding]
Show all
748 aa
83.7 kDa
No 0

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