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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:75.3 nTPM
HPA Brain:160.9 nTPM
GTEx:75.3 nTPM
FANTOM5:165.1 Scaled Tags Per Million
Pig:75.3 nTPM
Mouse:33.0 nTPM
Allen mouse:3.9 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.9
Sample id Sample description nTPM
Amygdala
nTPM: 150.0
2814 Male, age 76, right hemisphere 202.3
2514 Male, age 75, right hemisphere 158.9
2695 Female, age 67, right hemisphere 151.8
2517 Female, age 94, left hemisphere 132.7
1987 Female, age 91, left hemisphere 104.1
Basal amygdala
nTPM: 126.8
2827 Female, age 67, right hemisphere 154.4
1955 Male, age 76, both hemispheres 149.7
2110 Male, age 80, left hemisphere 134.8
2685 Female, age 94, left hemisphere 132.3
2609 Male, age 75, right hemisphere 112.9
2243 Female, age 91, right hemisphere 76.9
Central amygdala
nTPM: 142.3
1905 Male, age 76, both hemispheres 194.6
2701 Female, age 91, right hemisphere 156.4
2239 Male, age 80, left hemisphere 131.1
2826 Female, age 94, left hemisphere 129.5
2515 Male, age 75, right hemisphere 100.1
Corticomedial amygdala
nTPM: 110.8
2240 Male, age 76, both hemispheres 161.3
2429 Female, age 94, left hemisphere 132.2
2535 Female, age 67, right hemisphere 121.7
2428 Male, age 75, right hemisphere 116.4
2829 Male, age 80, left hemisphere 79.8
2242 Female, age 91, right hemisphere 53.2
Lateral amygdala
nTPM: 160.9
1883 Male, age 76, both hemispheres 194.3
2830 Female, age 67, right hemisphere 177.9
2534 Female, age 94, left hemisphere 157.7
2516 Male, age 75, right hemisphere 150.0
2256 Male, age 80, left hemisphere 144.1
2255 Female, age 91, right hemisphere 141.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 75.3
Samples: 152

Max nTPM: 180.9
Min nTPM: 17.4
Std nTPM: 29.8
Median nTPM: 70.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 180.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 172.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 146.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 145.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 137.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 132.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 131.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 131.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 126.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 126.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 125.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 123.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 122.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 121.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 120.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 117.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 115.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 114.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 114.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 111.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 110.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 109.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 108.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 106.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 105.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 105.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 105.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 103.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 102.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 101.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 100.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 97.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 96.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 96.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 93.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 92.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 92.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 91.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 91.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 89.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 89.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 89.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 88.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 86.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 86.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 86.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 85.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 84.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 84.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 84.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 83.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 83.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 82.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 82.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 81.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 80.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 79.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 79.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 79.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 78.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 77.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 77.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 77.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 77.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 75.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 74.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 74.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 74.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 73.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 72.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 72.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 71.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 71.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 70.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 69.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 69.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 69.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 68.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 67.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 67.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 66.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 66.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 65.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 65.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 64.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 64.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 63.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 63.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 63.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 62.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 62.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 61.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 61.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 60.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 60.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 60.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 59.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 58.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 58.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 58.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 58.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 57.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 57.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 57.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 57.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 56.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 55.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 55.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 54.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 54.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 54.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 52.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 52.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 52.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 51.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 50.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 50.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 50.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 49.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 47.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 47.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 46.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 46.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 46.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 46.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 45.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 44.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 44.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 44.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 43.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 43.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 42.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 41.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 40.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 40.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 39.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 37.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 37.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 35.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 34.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 34.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 32.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 31.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 31.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 25.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 25.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

165.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 165.1
FF:10151-102I7 76 years, female 165.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.3
Pig sample Sample description nTPM
Amygdala
nTPM: 75.3
Samples: 4

Max nTPM: 92.1
Min nTPM: 55.6
Sample A Female 75.1
Sample B Female 92.1
Sample C Male 78.5
Sample D Male 55.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 33.1
Samples: 4

Max nTPM: 37.9
Min nTPM: 28.2
Sample A Male 34.4
Sample B Male 28.2
Sample C Female 37.9
Sample D Female 31.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.9
70743907 Antisense, RP_050725_02_A11, Mouse strain C57BL/6J (56 days, male) 4.2
67792193 Antisense, RP_040920_01_C11, Mouse strain C57BL/6J (56 days, male) 3.7

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