MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.0 nTPM
HPA Brain:226.9 nTPM
GTEx:72.0 nTPM
FANTOM5:292.4 Scaled Tags Per Million
Pig:144.3 nTPM
Mouse:61.0 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 226.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 182.0
2019 Male, age 18, unknown 253.9
2411 Female, age 72, unknown 215.4
1830 Male, age 51, unknown 206.3
1833 Male, age 53, unknown 190.2
2828 Female, age 72, unknown 176.7
2666 Male, age 74, left hemisphere 175.3
1827 Male, age 72, unknown 163.3
1870 Female, age 42, unknown 157.4
2219 Male, age 76, both hemispheres 148.8
2586 Male, age 75, left hemisphere 132.7
Dorsal raphe nucleus
nTPM: 140.9
2750 Male, age 76, both hemispheres 232.4
2016 Female, age 72, unknown 130.7
1828 Male, age 53, unknown 119.2
2298 Female, age 72, unknown 115.5
2047 Male, age 72, unknown 106.9
Inferior colliculus
nTPM: 147.2
1890 Male, age 53, unknown 163.5
2849 Male, age 72, unknown 152.1
1848 Female, age 42, unknown 136.5
2097 Female, age 72, unknown 136.4
Median raphe nucleus
nTPM: 144.6
2220 Male, age 76, midline 144.6
Periaquaductal grey, anterior
nTPM: 123.9
2502 Female, age 75, unknown 129.1
1947 Male, age 18, unknown 125.8
1795 Male, age 51, unknown 116.9
Periaquaductal grey, dorsal
nTPM: 114.1
2464 Female, age 72, unknown 146.3
1831 Male, age 72, unknown 121.0
2850 Male, age 76, both hemispheres 99.5
1840 Male, age 53, unknown 89.7
Periaquaductal grey, lateral
nTPM: 124.0
2272 Male, age 74, both hemispheres 162.7
2053 Male, age 18, unknown 114.6
2140 Male, age 76, both hemispheres 94.8
Pretectal area
nTPM: 181.5
2007 Male, age 72, unknown 258.9
1815 Male, age 53, unknown 224.0
1817 Female, age 42, unknown 214.2
2407 Male, age 75, both hemispheres 201.2
1816 Male, age 51, unknown 199.0
1944 Female, age 72, unknown 198.8
2316 Male, age 76, right hemisphere 191.6
2273 Male, age 74, both hemispheres 142.2
2825 Male, age 18, unknown 126.8
2667 Female, age 75, unknown 120.2
2224 Female, age 72, unknown 119.5
Red nucleus
nTPM: 226.9
2785 Male, age 18, unknown 279.7
2823 Male, age 76, right hemisphere 269.4
1865 Male, age 51, unknown 265.1
2503 Female, age 72, unknown 240.5
1904 Male, age 53, unknown 239.0
1821 Female, age 72, unknown 237.0
2227 Male, age 72, unknown 215.4
2769 Male, age 72, unknown 212.8
2588 Male, age 74, left hemisphere 196.0
2725 Female, age 75, unknown 195.3
1954 Female, age 42, unknown 192.4
2584 Male, age 75, left hemisphere 180.3
Substantia nigra
nTPM: 169.0
2590 Female, age 75, unknown 249.7
1941 Male, age 53, unknown 219.4
2583 Male, age 75, right hemisphere 204.2
1889 Female, age 72, unknown 188.5
2409 Female, age 72, unknown 170.4
2665 Male, age 74, both hemispheres 163.2
1851 Male, age 51, unknown 142.9
2699 Male, age 18, unknown 128.6
1916 Female, age 42, unknown 114.0
2241 Male, age 72, unknown 109.1
Superior colliculus
nTPM: 188.9
1995 Male, age 72, unknown 255.1
1913 Female, age 42, unknown 242.5
1895 Male, age 76, right hemisphere 203.1
2668 Female, age 75, unknown 194.8
2587 Male, age 74, left hemisphere 192.9
2261 Male, age 18, unknown 190.7
2087 Female, age 72, unknown 183.8
1839 Male, age 51, unknown 166.4
1796 Male, age 53, unknown 142.2
2664 Male, age 75, both hemispheres 117.9
Ventral tegmental area
nTPM: 161.9
2410 Female, age 72, unknown 211.8
2218 Male, age 76, both hemispheres 198.2
2223 Female, age 72, unknown 167.9
1942 Male, age 51, unknown 138.0
2021 Male, age 53, unknown 134.6
1915 Female, age 42, unknown 120.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.0
Samples: 139

Max nTPM: 226.7
Min nTPM: 13.7
Std nTPM: 36.0
Median nTPM: 65.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 226.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 217.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 181.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 173.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 163.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 152.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 143.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 140.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 140.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 135.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 131.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 292.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 292.4
FF:10158-103A5 76 years, female 292.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 144.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 116.0
Samples: 4

Max nTPM: 161.0
Min nTPM: 91.3
Sample A Female 104.9
Sample B Female 91.3
Sample C Male 106.8
Sample D Male 161.0
Midbrain
nTPM: 144.3
Samples: 4

Max nTPM: 182.1
Min nTPM: 120.0
Sample A Female 182.1
Sample B Female 121.3
Sample C Male 153.7
Sample D Male 120.0
Periaqueductal gray
nTPM: 96.5
Samples: 3

Max nTPM: 109.6
Min nTPM: 86.3
Sample B Female 109.6
Sample C Male 86.3
Sample D Male 93.6
Superior colliculi
nTPM: 124.7
Samples: 4

Max nTPM: 154.6
Min nTPM: 73.8
Sample A Female 117.1
Sample B Female 73.8
Sample C Male 154.6
Sample D Male 153.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 71.1
Min nTPM: 52.4
Sample A Male 52.4
Sample B Male 59.7
Sample C Female 71.1
Sample D Female 60.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
70743907 Antisense, RP_050725_02_A11, Mouse strain C57BL/6J (56 days, male) 4.6
67792193 Antisense, RP_040920_01_C11, Mouse strain C57BL/6J (56 days, male) 2.3

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