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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:611.3 nTPM
HPA Brain:571.5 nTPM
GTEx:611.3 nTPM
FANTOM5:638.3 Scaled Tags Per Million
Pig:231.4 nTPM
Mouse:1093.5 nTPM
Allen mouse:9.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

571.5
Sample id Sample description nTPM
Amygdala
nTPM: 338.5
2514 Male, age 75, right hemisphere 476.0
2517 Female, age 94, left hemisphere 443.5
2814 Male, age 76, right hemisphere 336.6
1987 Female, age 91, left hemisphere 246.6
2695 Female, age 67, right hemisphere 190.0
Basal amygdala
nTPM: 526.5
2827 Female, age 67, right hemisphere 871.4
2685 Female, age 94, left hemisphere 599.3
2609 Male, age 75, right hemisphere 524.0
2110 Male, age 80, left hemisphere 451.2
2243 Female, age 91, right hemisphere 362.1
1955 Male, age 76, both hemispheres 350.7
Central amygdala
nTPM: 571.5
2826 Female, age 94, left hemisphere 1372.7
2239 Male, age 80, left hemisphere 439.9
2515 Male, age 75, right hemisphere 392.9
1905 Male, age 76, both hemispheres 326.8
2701 Female, age 91, right hemisphere 325.4
Corticomedial amygdala
nTPM: 464.4
2429 Female, age 94, left hemisphere 693.3
2535 Female, age 67, right hemisphere 648.9
2829 Male, age 80, left hemisphere 441.5
2240 Male, age 76, both hemispheres 381.9
2428 Male, age 75, right hemisphere 331.5
2242 Female, age 91, right hemisphere 289.3
Lateral amygdala
nTPM: 515.1
2534 Female, age 94, left hemisphere 935.7
2830 Female, age 67, right hemisphere 564.1
2516 Male, age 75, right hemisphere 483.7
2256 Male, age 80, left hemisphere 459.6
2255 Female, age 91, right hemisphere 346.5
1883 Male, age 76, both hemispheres 301.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

611.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 611.3
Samples: 152

Max nTPM: 1581.9
Min nTPM: 21.0
Std nTPM: 257.8
Median nTPM: 556.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1581.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1420.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1339.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1290.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1256.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1221.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1172.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1144.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1135.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1063.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1051.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1015.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 986.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 974.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 974.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 960.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 937.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 925.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 924.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 901.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 885.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 864.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 852.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 834.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 829.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 826.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 823.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 819.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 813.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 810.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 807.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 797.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 796.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 784.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 777.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 765.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 765.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 762.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 728.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 727.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 710.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 706.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 706.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 700.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 692.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 682.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 679.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 676.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 676.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 676.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 671.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 658.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 651.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 647.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 645.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 643.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 637.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 633.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 629.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 628.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 625.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 624.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 619.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 612.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 603.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 591.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 586.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 582.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 575.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 573.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 570.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 568.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 561.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 561.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 560.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 557.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 555.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 551.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 550.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 547.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 544.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 540.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 532.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 527.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 526.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 520.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 520.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 519.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 519.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 509.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 505.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 501.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 500.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 500.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 499.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 498.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 476.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 476.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 474.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 471.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 462.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 461.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 457.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 457.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 452.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 451.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 449.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 449.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 447.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 447.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 444.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 443.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 442.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 442.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 441.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 440.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 437.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 428.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 426.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 420.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 415.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 409.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 401.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 397.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 395.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 395.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 391.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 391.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 384.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 375.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 373.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 368.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 362.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 359.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 356.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 353.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 348.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 338.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 333.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 331.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 331.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 325.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 306.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 296.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 291.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 270.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 263.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 257.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 254.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 232.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 230.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 21.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

638.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 638.3
FF:10151-102I7 76 years, female 638.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

231.4
Pig sample Sample description nTPM
Amygdala
nTPM: 231.3
Samples: 4

Max nTPM: 289.0
Min nTPM: 174.9
Sample A Female 289.0
Sample B Female 213.2
Sample C Male 174.9
Sample D Male 248.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1093.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 1093.5
Samples: 4

Max nTPM: 1444.5
Min nTPM: 864.7
Sample A Male 864.7
Sample B Male 1065.9
Sample C Female 1444.5
Sample D Female 998.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.4
79556603 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 9.4
79360322 Antisense, RP_071018_02_A11, Mouse strain C57BL/6J (56 days, male) 8.4

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